public static void main( final String[] args ) { new ImageJ(); if ( !System.getProperty("os.name").toLowerCase().contains( "mac" ) ) GenericLoadParseQueryXML.defaultXMLfilename = "/home/preibisch/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset_tp18.xml"; else GenericLoadParseQueryXML.defaultXMLfilename = "/Users/spreibi/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset.xml"; new Intensity_Adjustment().run( null ); } }
public static void main( final String[] args ) { new ImageJ(); if ( !System.getProperty("os.name").toLowerCase().contains( "mac" ) ) GenericLoadParseQueryXML.defaultXMLfilename = "/home/preibisch/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset_tp18.xml"; else GenericLoadParseQueryXML.defaultXMLfilename = "/Users/spreibi/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset.xml"; new RemoveIntensity_Adjustment().run( null ); } }
public static void main( String[] args ) { IOFunctions.printIJLog = true; new ImageJ(); if ( !System.getProperty("os.name").toLowerCase().contains( "mac" ) ) GenericLoadParseQueryXML.defaultXMLfilename = "/home/preibisch/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset_tp18.xml"; else GenericLoadParseQueryXML.defaultXMLfilename = "/Users/spreibi/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset.xml"; new Image_Deconvolution().run( null ); } }
public static void main( String[] args ) { IOFunctions.printIJLog = true; new ImageJ(); if ( !System.getProperty("os.name").toLowerCase().contains( "mac" ) ) GenericLoadParseQueryXML.defaultXMLfilename = "/home/preibisch/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset_tp18.xml"; else GenericLoadParseQueryXML.defaultXMLfilename = "/Users/spreibi/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset.xml"; new Image_Fusion().run( null ); } }
public static void main( String[] args ) { IOFunctions.printIJLog = true; new ImageJ(); if ( !System.getProperty("os.name").toLowerCase().contains( "mac" ) ) GenericLoadParseQueryXML.defaultXMLfilename = "/home/preibisch/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset_tp18.xml"; else GenericLoadParseQueryXML.defaultXMLfilename = "/Users/spreibi/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset.xml"; new Image_Quality().run( null ); } }
public static void main( final String[] args ) { new ImageJ(); if ( !System.getProperty("os.name").toLowerCase().contains( "mac" ) ) GenericLoadParseQueryXML.defaultXMLfilename = "/home/preibisch/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset_tp18.xml"; else GenericLoadParseQueryXML.defaultXMLfilename = "/Users/spreibi/Documents/Microscopy/SPIM/HisYFP-SPIM//dataset.xml"; new Define_Bounding_Box().run( null ); } }
public static void main( final String[] args ) { new ImageJ(); new Duplicate_Transformation().run( null ); } }
public static void main(String[] args) { final JFrame theFrame = new JFrame(GraphicsEnvironment.getLocalGraphicsEnvironment().getScreenDevices()[0].getDefaultConfiguration()); theFrame.setSize( 100, 100 ); theFrame.pack(); theFrame.setVisible( true ); moveToScreenFraction(theFrame, 0.5, 0.0); new ImageJ(); IJ.log( "AAA" ); moveToScreenFraction( getIJLogWindow(), 0, 0.8 ); } }
public static void main( final String[] args ) { new ImageJ(); new ImportPlugIn().run(); } }
public static void main( final String[] args ) { LoadParseQueryXML.defaultXMLfilename = "/Users/spreibi/Documents/Microscopy/SPIM/HisYFP-SPIM/dataset.xml"; new ImageJ(); new Interest_Point_Detection().run( null ); } }
public static void main( final String[] args ) { new ImageJ(); new Visualize_Detections().run( null ); }
public static void main( String[] args ) { IOFunctions.printIJLog = true; new ImageJ(); new Specify_Calibration().run( null ); } }
public static void main( final String[] args ) { System.setProperty( "apple.laf.useScreenMenuBar", "true" ); new ImageJ(); IJ.run( "Confocal Series (2.2MB)" ); // IJ.run( "Fly Brain (1MB)" ); new OpenImagePlusPlugIn().run(); }
public static void main( final String[] args ) { new ImageJ(); IJ.run("Confocal Series (2.2MB)"); new ExportImagePlusPlugIn().run(); }
final static public void main( final String... args ) { new ImageJ(); final Project project = Project.openFSProject( "/home/saalfeld/tmp/intensity-corrected/elastic.xml", true ); final MatchIntensities matcher = new MatchIntensities(); matcher.invoke( project.getRootLayerSet() ); } }
/** Starts ImageJ if it's not already running. */ public void init() { ImageJ ij = IJ.getInstance(); if (ij==null || (ij!=null && !ij.isShowing())) new ImageJ(this); for (int i=1; i<=9; i++) { String url = getParameter("url"+i); if (url==null) break; ImagePlus imp = new ImagePlus(url); if (imp!=null) imp.show(); } }
@SuppressWarnings("unused") static public final void main(String[] args) { final ShortProcessor sp = (ShortProcessor) IJ.openImage("/home/albert/Desktop/t2/bridge-16bit.tif").getProcessor(); final ShortProcessor filtered = median(sp, 64, 0, 65535, 100); new ImageJ(); new ImagePlus("median", filtered).show(); } }
public static void main( String[] args ) throws SpimDataException { new ImageJ(); IOFunctions.printIJLog = true; final SpimData2 sdTiff = new XmlIoSpimData2( "" ).load( "/Users/spreibi/Documents/Grants and CV/BIMSB/Projects/Big Data Sticher/TestDownsampling/TIF/dataset.xml" ); final SpimData2 sdHdf5 = new XmlIoSpimData2( "" ).load( "/Users/spreibi/Documents/Grants and CV/BIMSB/Projects/Big Data Sticher/TestDownsampling/HDF5/dataset.xml" ); //String label = "beads4x"; //testLoad( sdTiff, sdHdf5, label ); testFresh( sdTiff, sdHdf5 ); }
public static void main( final String[] args ) { new ImageJ(); ImagePlus imp = new ImagePlus( "/Users/preibischs/workspace/TestLucyRichardson/src/resources/dros-1.tif" ); Img< FloatType > img = ImageJFunctions.convertFloat( imp ); ImageJFunctions.show( img.copy() ); ImageJFunctions.show( computeLazyMinFilter( img, 5 ) ); } }
public static void main(String[] args) { new ij.ImageJ(); ImagePlus img = IJ.openImage("/home/bene/PhD/brains/template.tif"); img = new ImagePlus("Slice 20", img.getStack().getProcessor(20)); new ImageConverter(img).convertToRGB(); img.show(); ij.IJ.runPlugIn("textureByRef.Texture_By_Ref_col", ""); }