- calculateChromosomeCounts
Update the attributes of the attributes map in the VariantContextBuilder to
reflect the proper chrom
- initializeMatchExps
Method for creating JexlVCMatchExp from input walker arguments names and exps.
These two arrays cont
- match
Matches each JexlVCMatchExp exp against the data contained in vc, and returns a
map from these expre
- computeEndFromAlleles
Compute the end position for this VariantContext from the alleles themselves In
the trivial case thi
- getMetaDataForField
- sitesOnlyVariantContext
Returns a newly allocated VC that is the same as VC, but without genotypes
- sitesOnlyVariantContexts
Returns a newly allocated list of VC, where each VC is the same as the input
VCs, but without genoty
- genotypeNames
- getSize