/** * Genotype-specific functions -- how many het calls are there in the genotypes? * * @return number of het calls */ public int getHetCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HET.ordinal()]; }
/** * Genotype-specific functions -- how many mixed calls are there in the genotypes? * * @return number of mixed calls */ public int getMixedCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.MIXED.ordinal()]; }
/** * Genotype-specific functions -- how many hom ref calls are there in the genotypes? * * @return number of hom ref calls */ public int getHomRefCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HOM_REF.ordinal()]; }
/** * Genotype-specific functions -- how many het calls are there in the genotypes? * * @return number of het calls */ public int getHetCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HET.ordinal()]; }
/** * Genotype-specific functions -- how many mixed calls are there in the genotypes? * * @return number of mixed calls */ public int getMixedCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.MIXED.ordinal()]; }
/** * Genotype-specific functions -- how many hom ref calls are there in the genotypes? * * @return number of hom ref calls */ public int getHomRefCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HOM_REF.ordinal()]; }
/** * Genotype-specific functions -- how many hom var calls are there in the genotypes? * * @return number of hom var calls */ public int getHomVarCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HOM_VAR.ordinal()]; }
/** * Genotype-specific functions -- how many no-calls are there in the genotypes? * * @return number of no calls */ public int getNoCallCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.NO_CALL.ordinal()]; }
/** * Genotype-specific functions -- how many het calls are there in the genotypes? * * @return number of het calls */ public int getHetCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HET.ordinal()]; }
/** * Genotype-specific functions -- how many hom ref calls are there in the genotypes? * * @return number of hom ref calls */ public int getHomRefCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HOM_REF.ordinal()]; }
/** * Genotype-specific functions -- how many no-calls are there in the genotypes? * * @return number of no calls */ public int getNoCallCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.NO_CALL.ordinal()]; }
/** * Genotype-specific functions -- how many hom var calls are there in the genotypes? * * @return number of hom var calls */ public int getHomVarCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HOM_VAR.ordinal()]; }
/** * Genotype-specific functions -- how many hom var calls are there in the genotypes? * * @return number of hom var calls */ public int getHomVarCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.HOM_VAR.ordinal()]; }
/** * Genotype-specific functions -- how many mixed calls are there in the genotypes? * * @return number of mixed calls */ public int getMixedCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.MIXED.ordinal()]; }
/** * Genotype-specific functions -- how many no-calls are there in the genotypes? * * @return number of no calls */ public int getNoCallCount() { calculateGenotypeCounts(); return genotypeCounts[GenotypeType.NO_CALL.ordinal()]; }