public String toStringWithoutGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s filters=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), String.join(",", commonInfo.getFilters())); }
public String toStringWithoutGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s filters=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), String.join(",", commonInfo.getFilters())); }
public String toStringDecodeGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s GT=%s filters=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), this.getGenotypes(), String.join(",", commonInfo.getFilters())); }
public String toStringWithoutGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes())); }
private String toStringUnparsedGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s GT=%s filters=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), ((LazyGenotypesContext)this.genotypes).getUnparsedGenotypeData(), String.join(",", commonInfo.getFilters())); }
private String toStringUnparsedGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s GT=%s filters=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), ((LazyGenotypesContext)this.genotypes).getUnparsedGenotypeData(), String.join(",", commonInfo.getFilters())); }
public String toStringDecodeGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s GT=%s filters=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), this.getGenotypes(), String.join(",", commonInfo.getFilters())); }
public String toStringDecodeGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s GT=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), this.getGenotypes()); }
private String toStringUnparsedGenotypes() { return String.format("[VC %s @ %s Q%s of type=%s alleles=%s attr=%s GT=%s", getSource(), contig + ":" + (start - stop == 0 ? start : start + "-" + stop), hasLog10PError() ? String.format("%.2f", getPhredScaledQual()) : ".", this.getType(), ParsingUtils.sortList(this.getAlleles()), ParsingUtils.sortedString(this.getAttributes()), ((LazyGenotypesContext)this.genotypes).getUnparsedGenotypeData()); }