public void finish() { cytoConversionRate = nCytoTotal == 0 ? 0 : nCytoConverted / (double)nCytoTotal; nCpgSeen = (int)cpgTotal.getSumOfValues(); nCpgConverted = (int)cpgConverted.getSumOfValues(); cpgConversionRate = nCpgSeen == 0 ? 0 : nCpgConverted / (double)nCpgSeen; coverageMean = cpgTotal.getMeanBinSize(); coverageMedian = (int)cpgTotal.getMedianBinSize(); }
public void finish() { cytoConversionRate = nCytoTotal == 0 ? 0 : nCytoConverted / (double)nCytoTotal; nCpgSeen = (int)cpgTotal.getSumOfValues(); nCpgConverted = (int)cpgConverted.getSumOfValues(); cpgConversionRate = nCpgSeen == 0 ? 0 : nCpgConverted / (double)nCpgSeen; coverageMean = cpgTotal.getMeanBinSize(); coverageMedian = (int)cpgTotal.getMedianBinSize(); }
@Test public void testGetMedianBinSize() { final int[] is = {4,4,5,5,5,6,6,6,6}; final Histogram<Integer> histo = new Histogram<>(); Assert.assertEquals(histo.getMedianBinSize(), 0, 0.000001); //empty for (final int i : is) histo.increment(i); Assert.assertEquals(histo.getMedianBinSize(), 3, 0.000001); //three fives }
@Test public void testGetMedianBinSize_Even() { final int[] is = {4,4,5,5,5}; final Histogram<Integer> histo = new Histogram<>(); Assert.assertEquals(histo.getMedianBinSize(), 0, 0.000001); //empty for (final int i : is) histo.increment(i); Assert.assertEquals(histo.getMedianBinSize(), (2+3)/2.0, 0.000001); //even split }