for (int i = 0; i < readBases.length; i++) {
if (SequenceUtil.isNoCall(readBases[i])) {
badCycleHistogram.increment(CoordMath.getCycle(record.getReadNegativeStrandFlag(), readBases.length, i));
badCycleHistogram.increment(CoordMath.getCycle(record.getReadNegativeStrandFlag(), readBases.length, i));
for (int i = 0; i < readBases.length; i++) {
if (SequenceUtil.isNoCall(readBases[i])) {
badCycleHistogram.increment(CoordMath.getCycle(record.getReadNegativeStrandFlag(), readBases.length, i));
badCycleHistogram.increment(CoordMath.getCycle(record.getReadNegativeStrandFlag(), readBases.length, i));