@Override void enableCrcChecking(final boolean enabled) { this.mCompressedInputStream.setCheckCrcs(enabled); }
@Override void enableCrcChecking(final boolean enabled) { this.mCompressedInputStream.setCheckCrcs(enabled); }
@Override void enableCrcChecking(final boolean enabled) { this.mCompressedInputStream.setCheckCrcs(enabled); }
@Override void enableCrcChecking(final boolean enabled) { this.mCompressedInputStream.setCheckCrcs(enabled); }
public int execute() throws IOException { final byte[] uncompressedBuffer = new byte[65536]; final BlockCompressedInputStream gunzipper = new BlockCompressedInputStream(blockFile); gunzipper.setCheckCrcs(true); gunzipper.read(uncompressedBuffer); gunzipper.close(); System.out.printf("SUCCESS!%n"); return 0; }
public void fillBuffer(long beg, long end) throws IOException { this.inFile.seek(beg); int totalRead = 0; for (int left = Math.min((int)(end - beg), arr.length); left > 0;) { final int r = inFile.read(arr, totalRead, left); if (r < 0) break; totalRead += r; left -= r; } arr = Arrays.copyOf(arr, totalRead); in = new ByteArraySeekableStream(arr); bgzf = new BlockCompressedInputStream(in); bgzf.setCheckCrcs(true); posGuesser = new BAMPosGuesser(in, bgzf, referenceSequenceCount); }
bgzf.setCheckCrcs(true);
bgzf.setCheckCrcs(true);
bgzf.setCheckCrcs(true);
private void canReadFromBlockStart(long blockStart) throws IOException { BlockCompressedInputStream blockCompressedInputStream = new BlockCompressedInputStream(file); blockCompressedInputStream.setCheckCrcs(true); blockCompressedInputStream.seek(blockStart << 16); byte[] b = new byte[100]; blockCompressedInputStream.read(b); } }
bgzfStream.setCheckCrcs(true); this.cin = bgzfStream; } else {
bgzfStream.setCheckCrcs(true); this.cin = bgzfStream; } else {
bgzfStream.setCheckCrcs(true); this.cin = bgzfStream; } else {
this.bgzf.setCheckCrcs(true);
this.bgzf.setCheckCrcs(true);