/** * Sets the input stream that records will be read from. */ @Override public void setInputStream(final InputStream is) { this.binaryCodec.setInputStream(is); }
/** * Sets the input stream that records will be read from. */ @Override public void setInputStream(final InputStream is) { this.binaryCodec.setInputStream(is); }
/** * Constructs BinaryCodec from an input stream * * @param inputStream Stream to read from, since we are reading isWriting is set to false */ public BinaryCodec(final InputStream inputStream) { this(); setInputStream(inputStream); }
/** * Constructs BinaryCodec from an input stream * * @param inputStream Stream to read from, since we are reading isWriting is set to false */ public BinaryCodec(final InputStream inputStream) { this(); setInputStream(inputStream); }
/** * Constructs BinaryCodec from an input stream * * @param inputStream Stream to read from, since we are reading isWriting is set to false */ public BinaryCodec(final InputStream inputStream) { this(); setInputStream(inputStream); }
public BAMPosGuesser(SeekableStream ss, BlockCompressedInputStream uncompressedBytes, int referenceSequenceCount) { this.ss = ss; this.uncompressedBytes = uncompressedBytes; this.referenceSequenceCount = referenceSequenceCount; binaryCodec.setInputStream(uncompressedBytes); }
/** * Sets the input stream that records will be read from. */ @Override public void setInputStream(final InputStream is) { this.binaryCodec.setInputStream(is); }
/** Sets the input stream that records will be read from. */ public void setInputStream(final InputStream is) { this.binaryCodec.setInputStream(is); }
/** * Sets the input stream that records will be read from. */ public void setInputStream(final InputStream is, final String filename) { this.binaryCodec.setInputStream(is); this.binaryCodec.setInputFileName(filename); }
/** * Sets the input stream that records will be read from. */ public void setInputStream(final InputStream is, final String filename) { this.binaryCodec.setInputStream(is); this.binaryCodec.setInputFileName(filename); }
public Bam_OBA_Supplier(BufferedInputStream is) { this.is = is; codec = new BinaryCodec(); codec.setInputStream(is); baos = new ByteArrayOutputStream(); refId = Integer.MIN_VALUE; recordCounter = 0; }
/** Sets the input stream that records will be read from. */ public void setInputStream(final InputStream is, final String filename) { this.binaryCodec.setInputStream(is); this.binaryCodec.setInputFileName(filename); }
/** * Sets the input stream that records will be read from. */ public void setInputStream(final InputStream is, final String filename) { this.binaryCodec.setInputStream(is); this.binaryCodec.setInputFileName(filename); }