final Map<String, SAMRecord> firstSeenMates = new HashMap<>(); final FastqWriterFactory factory = new FastqWriterFactory(); factory.setCreateMd5(CREATE_MD5_FILE);
final Map<String, SAMRecord> firstSeenMates = new HashMap<>(); final FastqWriterFactory factory = new FastqWriterFactory(); factory.setCreateMd5(CREATE_MD5_FILE);
fastqWriterFactory.setCreateMd5(CREATE_MD5_FILE); switch (READ_NAME_FORMAT) { case CASAVA_1_8:
fastqWriterFactory.setCreateMd5(CREATE_MD5_FILE); switch (READ_NAME_FORMAT) { case CASAVA_1_8: