- validateRefMD5
- <init>
- alignmentBordersSanityCheck
- buildSlice
Create a single Slice from CRAM Compression Records and a Compression Header.
The caller is responsi
- createCramRecordReader
Initialize a Cram Record Reader from a Slice
- getBrief
- getCoreBlockInputStream
- getExternalBlockInputMap
- getMultiRefAlignmentSpans
Uses a Multiple Reference Slice Alignment Reader to determine the Reference
Spans of a Slice. The in
- isMultiref
- setAttribute
- getCRAIEntry
Generate a CRAI Index entry from this Slice and the container offset. TODO:
investigate why we somet