private int addRandomSampleQCRoutineToDAX(Graph<CondorJob, CondorJobEdge> graph, int count, HTSFSample htsfSample, File fastqFile, CondorJob trimCountAdapterJob, File trimmedFastq, String outputPath) throws IOException { String sequenceDatabaseList = getPipelineBeanService().getAttributes().get("sequenceDatabaseList");
String fastaDatabase = getPipelineBeanService().getAttributes().get("fastaDatabase"); String quantificationDatabaseKey = getPipelineBeanService().getAttributes().get("quantificationDatabaseKey"); String primerSequence1 = getPipelineBeanService().getAttributes().get("primerSequence1"); String primerSequence2 = getPipelineBeanService().getAttributes().get("primerSequence2");
String siteName = getPipelineBeanService().getAttributes().get("siteName");