How to use
Interaction2xmlPSI25
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interaction2xmlPSI25 (Showing top 6 results out of 315)

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private void myMethod () {
 Dictionary d =new Hashtable()
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new Properties()
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}

createNames( session, element, interaction );
createInteractionXrefs( session, element, interaction );
createAvailability( session, element, interaction );
    createParticipant( session, inferredInteractionElement, interactor, feature );
    createParticipant( session, inferredInteractionElement, interactor2, boundDomain );
createNegativeFlag( session, element, interaction );
createConfidence( session, element, interaction );
createAttributeList( session, element, interaction, attributeListFilter );
createDissociationConstant( session, element, interaction );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Interaction2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Interaction2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Interaction2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Interaction2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Interaction2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Interaction2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Interaction2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Interaction2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

createNames( session, element, interaction );
createInteractionXrefs( session, element, interaction );
createAvailability( session, element, interaction );
    createParticipant( session, inferredInteractionElement, interactor, feature );
    createParticipant( session, inferredInteractionElement, interactor2, boundDomain );
createNegativeFlag( session, element, interaction );
createConfidence( session, element, interaction );
createAttributeList( session, element, interaction, attributeListFilter );
createDissociationConstant( session, element, interaction );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Interaction2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Interaction2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Interaction2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Interaction2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

createNames( session, element, interaction );
createInteractionXrefs( session, element, interaction );
createAvailability( session, element, interaction );
    createParticipant( session, inferredInteractionElement, interactor, feature );
    createParticipant( session, inferredInteractionElement, interactor2, boundDomain );
createNegativeFlag( session, element, interaction );
createConfidence( session, element, interaction );
createAttributeList( session, element, interaction, attributeListFilter );
createDissociationConstant( session, element, interaction );

Javadoc

Process the common behaviour of an IntAct Interaction when exporting PSI version 2.

Most used methods

createAttributeList
createAvailability
createConfidence
createDissociationConstant
createInteractionXrefs
Generate the xref tag of the given protein. That content is attached to the given parent Element.
createNames
createNegativeFlag
createParticipant
getInstance

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How to useInteraction2xmlPSI25 in uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interaction2xmlPSI25 (Showing top 6 results out of 315)

How to use
Interaction2xmlPSI25
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25