public T export(File workDir, T job) throws IOException { logger.info("ENTERING export(File, LSFJob)"); File submitFile = new File(workDir, String.format("%s.sub", job.getName())); FileWriter submitFileWriter = new FileWriter(submitFile); submitFileWriter.write(String.format("#$ -V%n", job.getName())); submitFileWriter.write(String.format("#$ -N %s%n", job.getName())); if (StringUtils.isNotEmpty(job.getQueueName())) { submitFileWriter.write(String.format("#$ -q %s%n", job.getQueueName())); if (StringUtils.isNotEmpty(job.getProject())) { submitFileWriter.write(String.format("#$ -P %s%n", job.getProject())); if (job.getWallTime() != null) { submitFileWriter.write(String.format("#$ -l h_rt=%02d:%02d:00%n", (job.getWallTime() % 3600) / 60, (job.getWallTime() % 60))); if (job.getMemory() != null) { submitFileWriter.write(String.format("#$ -l mf=%dG%n", job.getMemory() / 1024)); job.setOutput(new File(String.format("%s/%s.out", workDir.getAbsolutePath(), job.getOutput().getName()))); job.setError(new File(String.format("%s/%s.err", workDir.getAbsolutePath(), job.getError().getName()))); submitFileWriter.write(String.format("#$ -o %s%n", job.getOutput().getAbsolutePath())); submitFileWriter.write(String.format("#$ -e %s%n", job.getError().getAbsolutePath())); submitFileWriter.write(String.format("#$ -pe threads %d%n", job.getNumberOfProcessors())); submitFileWriter.write(job.getExecutable().getAbsolutePath());
SGESSHJob job = new SGESSHJob(); job.setTransferExecutable(Boolean.TRUE); job.setTransferInputs(Boolean.TRUE); job.setQueueName(this.queue.getName()); job.setName(this.jobName); job.setHostCount(1); job.setNumberOfProcessors(getQueue().getNumberOfProcessors()); job.setOutput(new File("glidein.out")); job.setError(new File("glidein.err")); job.setWallTime(this.queue.getRunTime()); job.setMemory(null); File glideinScript = new File(localWorkDir.getAbsolutePath(), "glidein.sh"); writeTemplate(velocityContext, glideinScript, glideinScriptMacro); job.setExecutable(glideinScript); File condorConfigLocal = new File(localWorkDir.getAbsolutePath(), "condor_config.local"); writeTemplate(velocityContext, condorConfigLocal, condorConfigLocalScriptMacro); job.getInputFiles().add(condorConfigLocal); File condorConfig = new File(localWorkDir.getAbsolutePath(), "condor_config"); writeTemplate(velocityContext, condorConfig, condorConfigScriptMacro); job.getInputFiles().add(condorConfig); this.job.getTransferExecutable(), this.job.getExecutable(), this.job.getTransferInputs(), this.job.getInputFiles(), job.getSubmitFile()); String targetFile = String.format("%s/%s", remoteWorkDir, job.getSubmitFile().getName());
this.job.getTransferExecutable(), this.job.getExecutable(), this.job.getTransferInputs(), this.job.getInputFiles(), job.getSubmitFile()); String targetFile = String.format("%s/%s", remoteWorkDir, job.getSubmitFile().getName()); throw new JLRMException("failed to parse the jobid number"); } else { job.setId(matcher.group(1));
public T export(File workDir, String remoteWorkDir, T job) throws IOException { logger.info("ENTERING export(File, SGESSHJob)"); File submitFile = new File(workDir, String.format("%s.sub", job.getName())); submitFileWriter.write(String.format("#$ -V%n", job.getName())); submitFileWriter.write(String.format("#$ -N %s%n", job.getName())); if (StringUtils.isNotEmpty(job.getQueueName())) { submitFileWriter.write(String.format("#$ -q %s%n", job.getQueueName())); if (StringUtils.isNotEmpty(job.getProject())) { submitFileWriter.write(String.format("#$ -P %s%n", job.getProject())); if (job.getWallTime() != null) { submitFileWriter.write(String.format("#$ -l h_rt=%02d:%02d:00%n", (job.getWallTime() % 3600) / 60, (job.getWallTime() % 60))); if (job.getMemory() != null) { submitFileWriter.write(String.format("#$ -l mf=%s%n", job.getMemory())); job.setOutput(new File(String.format("%s/%s.out", remoteWorkDir, job.getOutput().getName()))); job.setError(new File(String.format("%s/%s.err", remoteWorkDir, job.getError().getName()))); submitFileWriter.write(String.format("#$ -o %s%n", job.getOutput().getAbsolutePath())); submitFileWriter.write(String.format("#$ -e %s%n", job.getError().getAbsolutePath())); if (job.getNumberOfProcessors() != null) { submitFileWriter.write(String.format("#$ -pe threads %d%n", job.getNumberOfProcessors())); if (job.getTransferExecutable()) {