.setId(fileId.toString()) .setPath(studyConfiguration.getFileIds().inverse().get(fileId)) .setSampleIds(sampleNames) .build());
/** Creates a Builder by copying an existing VariantFileMetadata instance */ private Builder(org.opencb.biodata.models.variant.metadata.VariantFileMetadata other) { super(org.opencb.biodata.models.variant.metadata.VariantFileMetadata.SCHEMA$); if (isValidValue(fields()[0], other.id)) { this.id = data().deepCopy(fields()[0].schema(), other.id); fieldSetFlags()[0] = true; } if (isValidValue(fields()[1], other.path)) { this.path = data().deepCopy(fields()[1].schema(), other.path); fieldSetFlags()[1] = true; } if (isValidValue(fields()[2], other.sampleIds)) { this.sampleIds = data().deepCopy(fields()[2].schema(), other.sampleIds); fieldSetFlags()[2] = true; } if (isValidValue(fields()[3], other.stats)) { this.stats = data().deepCopy(fields()[3].schema(), other.stats); fieldSetFlags()[3] = true; } if (isValidValue(fields()[4], other.header)) { this.header = data().deepCopy(fields()[4].schema(), other.header); fieldSetFlags()[4] = true; } if (isValidValue(fields()[5], other.attributes)) { this.attributes = data().deepCopy(fields()[5].schema(), other.attributes); fieldSetFlags()[5] = true; } }
@Override public VariantFileMetadata build() { try { VariantFileMetadata record = new VariantFileMetadata(); record.id = fieldSetFlags()[0] ? this.id : (java.lang.String) defaultValue(fields()[0]); record.path = fieldSetFlags()[1] ? this.path : (java.lang.String) defaultValue(fields()[1]); record.sampleIds = fieldSetFlags()[2] ? this.sampleIds : (java.util.List<java.lang.String>) defaultValue(fields()[2]); record.stats = fieldSetFlags()[3] ? this.stats : (org.opencb.biodata.models.variant.metadata.VariantSetStats) defaultValue(fields()[3]); record.header = fieldSetFlags()[4] ? this.header : (org.opencb.biodata.models.variant.metadata.VariantFileHeader) defaultValue(fields()[4]); record.attributes = fieldSetFlags()[5] ? this.attributes : (java.util.Map<java.lang.String,java.lang.String>) defaultValue(fields()[5]); return record; } catch (Exception e) { throw new org.apache.avro.AvroRuntimeException(e); } } }
/** Creates a Builder by copying an existing Builder */ private Builder(org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder other) { super(other); if (isValidValue(fields()[0], other.id)) { this.id = data().deepCopy(fields()[0].schema(), other.id); fieldSetFlags()[0] = true; } if (isValidValue(fields()[1], other.path)) { this.path = data().deepCopy(fields()[1].schema(), other.path); fieldSetFlags()[1] = true; } if (isValidValue(fields()[2], other.sampleIds)) { this.sampleIds = data().deepCopy(fields()[2].schema(), other.sampleIds); fieldSetFlags()[2] = true; } if (isValidValue(fields()[3], other.stats)) { this.stats = data().deepCopy(fields()[3].schema(), other.stats); fieldSetFlags()[3] = true; } if (isValidValue(fields()[4], other.header)) { this.header = data().deepCopy(fields()[4].schema(), other.header); fieldSetFlags()[4] = true; } if (isValidValue(fields()[5], other.attributes)) { this.attributes = data().deepCopy(fields()[5].schema(), other.attributes); fieldSetFlags()[5] = true; } }
/** Checks whether the 'attributes' field has been set */ public boolean hasAttributes() { return fieldSetFlags()[5]; }
/** Checks whether the 'header' field has been set */ public boolean hasHeader() { return fieldSetFlags()[4]; }
/** Creates a new VariantFileMetadata RecordBuilder by copying an existing VariantFileMetadata instance */ public static org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder newBuilder(org.opencb.biodata.models.variant.metadata.VariantFileMetadata other) { return new org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder(other); }
/** Creates a new VariantFileMetadata RecordBuilder by copying an existing Builder */ public static org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder newBuilder(org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder other) { return new org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder(other); }
/** Creates a new VariantFileMetadata RecordBuilder */ public static org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder newBuilder() { return new org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder(); }
/** Checks whether the 'id' field has been set */ public boolean hasId() { return fieldSetFlags()[0]; }
/** Checks whether the 'stats' field has been set */ public boolean hasStats() { return fieldSetFlags()[3]; }
/** Checks whether the 'sampleIds' field has been set */ public boolean hasSampleIds() { return fieldSetFlags()[2]; }
/** Checks whether the 'path' field has been set */ public boolean hasPath() { return fieldSetFlags()[1]; }
/** Clears the value of the 'stats' field */ public org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder clearStats() { stats = null; fieldSetFlags()[3] = false; return this; }
/** Clears the value of the 'path' field */ public org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder clearPath() { path = null; fieldSetFlags()[1] = false; return this; }
/** Sets the value of the 'header' field */ public org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder setHeader(org.opencb.biodata.models.variant.metadata.VariantFileHeader value) { validate(fields()[4], value); this.header = value; fieldSetFlags()[4] = true; return this; }
/** Sets the value of the 'sampleIds' field */ public org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder setSampleIds(java.util.List<java.lang.String> value) { validate(fields()[2], value); this.sampleIds = value; fieldSetFlags()[2] = true; return this; }
/** Sets the value of the 'id' field */ public org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder setId(java.lang.String value) { validate(fields()[0], value); this.id = value; fieldSetFlags()[0] = true; return this; }
/** Clears the value of the 'header' field */ public org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder clearHeader() { header = null; fieldSetFlags()[4] = false; return this; }
/** Clears the value of the 'sampleIds' field */ public org.opencb.biodata.models.variant.metadata.VariantFileMetadata.Builder clearSampleIds() { sampleIds = null; fieldSetFlags()[2] = false; return this; }