TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder -> distancesFromStartOfRead[i] = new DensityMapperCapped("distanceToStartOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder -> distancesFromEndOfRead[i] = new DensityMapperCapped("distanceToEndOfRead", 0, genomicContextLength / 2, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward","distancesToReadVariations.reverse", -50,50, sbiProperties, baseInformationOrBuilder ->
distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward","distancesToReadVariations.reverse", -50,50, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward","distancesToReadVariations.reverse", -50,50, sbiProperties, baseInformationOrBuilder ->
distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward","distancesToReadVariations.reverse", -50,50, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward","distancesToReadVariations.reverse", -50,50, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward","distancesToReadVariations.reverse", -50,50, sbiProperties, baseInformationOrBuilder ->
TraversalHelper.forOneSampleGenotype(sampleIndex, constantGenotypeIndex, baseInformationOrBuilder, BaseInformationRecords.CountInfo::getNumVariationsInReadsList)); distancesToReadVariations[i] = new DensityMapperCapped("distancesToReadVariations.forward", "distancesToReadVariations.reverse", -50, 50, sbiProperties, baseInformationOrBuilder ->