final VCFHeader testHeader = new VCFHeader(new LinkedHashSet<VCFHeaderLine>(allLines)); final boolean expectedConsistent = expectedConsistent(testHeader, inputLineCounter); tests.add(new Object[]{new HeaderOrderTestCase(inputHeader, testHeader, expectedConsistent)}); final VCFHeader testHeaderWithSamples = new VCFHeader(inputHeader.getMetaDataInInputOrder(), testSamplesPermutation); final boolean expectedConsistent = testSamples.equals(inSamples); tests.add(new Object[]{new HeaderOrderTestCase(inputHeaderWithSamples, testHeaderWithSamples, expectedConsistent)});