List<File> readPairList = PipelineUtil.getReadPairList(htsfSample.getFileDatas(), sequencerRun.getName(), htsfSample.getLaneIndex()); logger.info("fileList = {}", readPairList.size()); String r1FastqRootName = PipelineUtil.getRootFastqName(r1FastqFile.getName()); String r2FastqRootName = PipelineUtil.getRootFastqName(r2FastqFile.getName());
List<File> readPairList = PipelineUtil.getReadPairList(htsfSample.getFileDatas(), sequencerRun.getName(), htsfSample.getLaneIndex()); logger.info("fileList = {}", readPairList.size()); for (File fastqFile : readPairList) { String fastqRootName = PipelineUtil.getRootFastqName(fastqFile.getName()); String r1FastqRootName = PipelineUtil.getRootFastqName(r1FastqFile.getName()); String r2FastqRootName = PipelineUtil.getRootFastqName(r2FastqFile.getName());