protected void traverseInstitution(Institution institution, IntactVisitor ... visitors) { if (institution == null) return; for (IntactVisitor visitor : visitors) { visitor.visitInstitution(institution); } }
public DefaultTraverser() { this.recursionChecker = new RecursionChecker(); }
protected void traverseConfidence(Confidence confidence, IntactVisitor... visitors) { if (confidence == null) return; for (IntactVisitor visitor : visitors) { visitor.visitConfidence(confidence); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(confidence)) { return; } traverse(confidence.getCvConfidenceType(), visitors); }
protected void traverseAnnotation(Annotation annotation, IntactVisitor... visitors) { if (annotation == null) return; for (IntactVisitor visitor : visitors) { visitor.visitAnnotation(annotation); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(annotation)) { return; } traverse(annotation.getCvTopic(), visitors); traverse(annotation.getOwner(), visitors); }
protected void traverseAlias(Alias alias, IntactVisitor... visitors) { if (alias == null) return; for (IntactVisitor visitor : visitors) { visitor.visitAlias(alias); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(alias)) { return; } traverse(alias.getCvAliasType(), visitors); traverse(alias.getOwner(), visitors); }
protected void traverseBioSource(BioSource bioSource, IntactVisitor ... visitors) { if (bioSource == null) return; for (IntactVisitor visitor : visitors) { visitor.visitBioSource(bioSource); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(bioSource)) { return; } traverse(bioSource.getCvCellType(), visitors); traverse(bioSource.getCvTissue(), visitors); }
protected void traverseInteractor(Interactor interactor, IntactVisitor ... visitors) { if (interactor == null) return; for (IntactVisitor visitor : visitors) { visitor.visitInteractor(interactor); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(interactor)) { return; } traverse(interactor.getCvInteractorType(), visitors); traverse(interactor.getBioSource(), visitors); }
protected void traverseRange(Range range, IntactVisitor... visitors) { if (range == null) return; for (IntactVisitor visitor : visitors) { visitor.visitRange(range); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(range)) { return; } traverse(range.getFromCvFuzzyType(), visitors); traverse(range.getToCvFuzzyType(), visitors); }
protected void traverseParameter(Parameter parameter, IntactVisitor... visitors) { if (parameter == null) return; for (IntactVisitor visitor : visitors) { visitor.visitParameter(parameter); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(parameter)) { return; } traverse(parameter.getCvParameterType(), visitors); traverse(parameter.getCvParameterUnit(), visitors); }
protected void traverseXref(Xref xref, IntactVisitor... visitors) { if (xref == null) return; for (IntactVisitor visitor : visitors) { visitor.visitXref(xref); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(xref)) { return; } traverse(xref.getCvXrefQualifier(), visitors); traverse(xref.getCvDatabase(), visitors); traverse(xref.getOwner(), visitors); }
protected void traverseExperiment(Experiment experiment, IntactVisitor ... visitors) { if (experiment == null) return; for (IntactVisitor visitor : visitors) { visitor.visitExperiment(experiment); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(experiment)) { return; } traverse(experiment.getCvIdentification(), visitors); traverse(experiment.getCvInteraction(), visitors); traverse(experiment.getBioSource(), visitors); traverse(experiment.getPublication(), visitors); traverse(experiment.getInteractions(), visitors); }
protected void traversePublication(Publication publication, IntactVisitor ... visitors) { if (publication == null) return; for (IntactVisitor visitor : visitors) { visitor.visitPublication(publication); traverse(publication.getExperiments(), visitors); } }
protected void traverseAnnotation(Annotation annotation, IntactVisitor... visitors) { if (annotation == null) return; for (IntactVisitor visitor : visitors) { visitor.visitAnnotation(annotation); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(annotation)) { return; } traverse(annotation.getCvTopic(), visitors); traverse(annotation.getOwner(), visitors); }
protected void traverseAlias(Alias alias, IntactVisitor... visitors) { if (alias == null) return; for (IntactVisitor visitor : visitors) { visitor.visitAlias(alias); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(alias)) { return; } traverse(alias.getCvAliasType(), visitors); traverse(alias.getOwner(), visitors); }
protected void traverseBioSource(BioSource bioSource, IntactVisitor ... visitors) { if (bioSource == null) return; for (IntactVisitor visitor : visitors) { visitor.visitBioSource(bioSource); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(bioSource)) { return; } traverse(bioSource.getCvCellType(), visitors); traverse(bioSource.getCvTissue(), visitors); }
protected void traverseInteractor(Interactor interactor, IntactVisitor ... visitors) { if (interactor == null) return; for (IntactVisitor visitor : visitors) { visitor.visitInteractor(interactor); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(interactor)) { return; } traverse(interactor.getCvInteractorType(), visitors); traverse(interactor.getBioSource(), visitors); }
protected void traverseConfidence(Confidence confidence, IntactVisitor... visitors) { if (confidence == null) return; for (IntactVisitor visitor : visitors) { visitor.visitConfidence(confidence); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(confidence)) { return; } traverse(confidence.getCvConfidenceType(), visitors); }
protected void traverseRange(Range range, IntactVisitor... visitors) { if (range == null) return; for (IntactVisitor visitor : visitors) { visitor.visitRange(range); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(range)) { return; } traverse(range.getFromCvFuzzyType(), visitors); traverse(range.getToCvFuzzyType(), visitors); }
protected void traverseParameter(Parameter parameter, IntactVisitor... visitors) { if (parameter == null) return; for (IntactVisitor visitor : visitors) { visitor.visitParameter(parameter); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(parameter)) { return; } traverse(parameter.getCvParameterType(), visitors); traverse(parameter.getCvParameterUnit(), visitors); }
protected void traverseInstitution(Institution institution, IntactVisitor ... visitors) { if (institution == null) return; for (IntactVisitor visitor : visitors) { visitor.visitInstitution(institution); } }