How to use uk.ac.ebi.intact.application.dataConversion.psiUpload.checker

public static void check( ) {
  initialise( );
}

protected static BioSource getBioSource( final String taxid,
                     final CellTypeTag cellType,
                     final TissueTag tissue ) {
  String id = buildID( taxid, cellType, tissue );
  return (BioSource) cache.get( id );
}

public static void ckeck( FeatureTag feature ) {
  if ( feature.hasFeatureDetection() ) {
    checkCvFeatureIdentification( feature );
  }
  checkCvTypeIdentification( feature );
  for ( Iterator iterator = feature.getXrefs().iterator(); iterator.hasNext(); ) {
    XrefTag xref = (XrefTag) iterator.next();
    XrefChecker.check( xref );
  }
}

public static BioSource getBioSource( final OrganismTag organism ) {
  if ( organism == null ) {
    return null;
  }
  final String taxid = organism.getTaxId();
  final CellTypeTag cellType = organism.getCellType();
  final TissueTag tissue = organism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

  public static void check( final HostOrganismTag hostOrganism,
               final BioSourceFactory bioSourceFactory ) {

    final String taxid = hostOrganism.getTaxId();
    final CellTypeTag cellType = hostOrganism.getCellType();
    final TissueTag tissue = hostOrganism.getTissue();
    check( taxid, cellType, tissue, bioSourceFactory );
  }
}

  public static void check( final OrganismTag organism,
               final BioSourceFactory bioSourceFactory ) {

    final String taxid = organism.getTaxId();
    final CellTypeTag cellType = organism.getCellType();
    final TissueTag tissue = organism.getTissue();
    check( taxid, cellType, tissue, bioSourceFactory );
  }
}

public static BioSource getBioSource( final HostOrganismTag hostOrganism ) {
  final String taxid = hostOrganism.getTaxId();
  final CellTypeTag cellType = hostOrganism.getCellType();
  final TissueTag tissue = hostOrganism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

public static void ckeck( FeatureTag feature ) {
  if ( feature.hasFeatureDetection() ) {
    checkCvFeatureIdentification( feature );
  }
  checkCvTypeIdentification( feature );
  for ( Iterator iterator = feature.getXrefs().iterator(); iterator.hasNext(); ) {
    XrefTag xref = (XrefTag) iterator.next();
    XrefChecker.check( xref );
  }
}

public static void check( ) {
  initialise( );
}

public static BioSource getBioSource( final OrganismTag organism ) {
  if ( organism == null ) {
    return null;
  }
  final String taxid = organism.getTaxId();
  final CellTypeTag cellType = organism.getCellType();
  final TissueTag tissue = organism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

  public static void check( final HostOrganismTag hostOrganism,
               final BioSourceFactory bioSourceFactory ) {

    final String taxid = hostOrganism.getTaxId();
    final CellTypeTag cellType = hostOrganism.getCellType();
    final TissueTag tissue = hostOrganism.getTissue();
    check( taxid, cellType, tissue, bioSourceFactory );
  }
}

  public static void check( final OrganismTag organism,
               final BioSourceFactory bioSourceFactory ) {

    final String taxid = organism.getTaxId();
    final CellTypeTag cellType = organism.getCellType();
    final TissueTag tissue = organism.getTissue();
    check( taxid, cellType, tissue, bioSourceFactory );
  }
}

public static BioSource getBioSource( final HostOrganismTag hostOrganism ) {
  final String taxid = hostOrganism.getTaxId();
  final CellTypeTag cellType = hostOrganism.getCellType();
  final TissueTag tissue = hostOrganism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

protected static BioSource getBioSource( final String taxid,
                     final CellTypeTag cellType,
                     final TissueTag tissue ) {
  String id = buildID( taxid, cellType, tissue );
  return (BioSource) cache.get( id );
}

public static void check( ) {
  initialise( );
}

public static BioSource getBioSource( final OrganismTag organism ) {
  if ( organism == null ) {
    return null;
  }
  final String taxid = organism.getTaxId();
  final CellTypeTag cellType = organism.getCellType();
  final TissueTag tissue = organism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

  public static void check( final HostOrganismTag hostOrganism,
               final BioSourceFactory bioSourceFactory ) {

    final String taxid = hostOrganism.getTaxId();
    final CellTypeTag cellType = hostOrganism.getCellType();
    final TissueTag tissue = hostOrganism.getTissue();
    check( taxid, cellType, tissue, bioSourceFactory );
  }
}

  public static void check( final OrganismTag organism,
               final BioSourceFactory bioSourceFactory ) {

    final String taxid = organism.getTaxId();
    final CellTypeTag cellType = organism.getCellType();
    final TissueTag tissue = organism.getTissue();
    check( taxid, cellType, tissue, bioSourceFactory );
  }
}

public static BioSource getBioSource( final HostOrganismTag hostOrganism ) {
  final String taxid = hostOrganism.getTaxId();
  final CellTypeTag cellType = hostOrganism.getCellType();
  final TissueTag tissue = hostOrganism.getTissue();
  return getBioSource( taxid, cellType, tissue );
}

protected static BioSource getBioSource( final String taxid,
                     final CellTypeTag cellType,
                     final TissueTag tissue ) {
  String id = buildID( taxid, cellType, tissue );
  return (BioSource) cache.get( id );
}