/** * * @return name of enum object */ public String getName(){ return name(); }
/** * * @return name of enum object */ public String getName(){ return name(); }
@Authors(authors = {"Matthew Hindle"}, emails = {"matthew_hindle at users.sourceforge.net"}) @Custodians(custodians = {"Jochen Weile"}, emails = {"jweile at users.sourceforge.net"}) @Status(description = "Set to DISCONTINUED 4 May 2010 due to System.out usage. (Christian)", status = StatusType.DISCONTINUED) public class Export extends ONDEXExport
@DatabaseTarget(name = "GlycomeDB", description = "A carbohydrate structure metadatabase", version = "", url = "http://www.glycome-db.org") @Authors(authors = {"Jan Taubert"}, emails = {"jantaubert at users.sourceforge.net"}) @Custodians(custodians = {"Victor Lesk"}, emails = {"v.lesk at imperial.ac.uk"}) public class Parser extends ONDEXParser implements ArgumentNames {
@Status(description = "Parses Arabidopsis CDS and proteins, to be used with TAIR release 2010. Tested August 2013 (Artem Lysenko)", status = StatusType.STABLE) @DatabaseTarget(name = "TAIR", description = "The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana ", version = "10", url = "http://www.arabidopsis.org") @DataURL(name = "TAIR ftp", description = "ftp.arabidopsis.org", urls = {"ftp://ftp.arabidopsis.org/Genes/TAIR10_genome_release/*",
@Status(description = "Untested formally", status = StatusType.EXPERIMENTAL) @DatabaseTarget(name = "BIOBASE TRANSFAC", description = "A manually curated database of transcription factors", version = "",
@Authors(authors = {"Matthew Hindle"}, emails = {"matthew_hindle at users.sourceforge.net"}) @Custodians(custodians = {"Jochen Weile"}, emails = {" \tjweile at users.sourceforge.net"}) public class Filter extends ONDEXFilter
@Status( status = StatusType.STABLE ) public class RDFExporterPlugin extends ONDEXExport
@Custodians(custodians = {"Jochen Weile"}, emails = {"jweile at users.sourceforge.net"}) public class Transformer extends ONDEXTransformer implements ArgumentNames {
@Webservice(description = "Webservices make no direct use of GraphAdapter. August 2011 Christian", include = IncludeType.NEVER) public class Export extends ONDEXExport {
@Authors(authors = {"Matthew Hindle"}, emails = {"matthew_hindle at users.sourceforge.net"}) @Custodians(custodians = {"Jochen Weile"}, emails = {"jweile at users.sourceforge.net"}) @Status(description = "Set to DISCONTINUED 4 May 2010 due to System.out usage. (Christian)", status = StatusType.DISCONTINUED) public class Export extends ONDEXExport
@DatabaseTarget(name = "GlycomeDB", description = "A carbohydrate structure metadatabase", version = "", url = "http://www.glycome-db.org") @Authors(authors = {"Jan Taubert", "Victor Lesk"}, emails = {"jantaubert at users.sourceforge.net", "v.lesk at imperial.ac.uk"}) @Custodians(custodians = {"Victor Lesk"}, emails = {"v.lesk at imperial.ac.uk"}) public class Parser extends ONDEXParser
@Status(description = "Untested formally", status = StatusType.EXPERIMENTAL) @DatabaseTarget(name = "BIOBASE TRANSPATH", description = "A manually curated database of pathways", version = "",
@Custodians(custodians = {"Jochen Weile"}, emails = {"jweile at users.sourceforge.net"}) public class Mapping extends ONDEXMapping
@Authors(authors = { "Jan Taubert" }, emails = { "jantaubert at users.sourceforge.net" }) @Custodians(custodians = { "Jan Taubert" }, emails = { "jantaubert at users.sourceforge.net" }) @Status(status = StatusType.STABLE, description = "Tested October 2012 (Jan Taubert)") public class Parser extends ONDEXParser {
@Authors(authors = {"Matthew Hindle"}, emails = {"matthew_hindle at users.sourceforge.net"}) @Custodians(custodians = {"Matthew Hindle"}, emails = {"matthew_hindle at users.sourceforge.net"}) @Status(status = StatusType.EXPERIMENTAL) public class NT2ProteinBLASTxAlignmentMapping extends ONDEXMapping {
@Authors(authors = {"Matthew Hindle"}, emails = {"matthew_hindle at users.sourceforge.net"}) @Custodians(custodians = {"Jochen Weile"}, emails = {"jweile at users.sourceforge.net"}) @Status(description = "Set to DISCONTINUED 4 May 2010 due to System.out usage. (Christian)", status = StatusType.DISCONTINUED) public class Export extends ONDEXExport
@Status(description = "Tested July 2010 (Jan Taubert)", status = StatusType.STABLE) @Authors(authors = {"Matthew Pocock", "Jan Taubert"}, emails = {"drdozer at users.sourceforge.net", "jantaubert at users.sourceforge.net"}) @Custodians(custodians = {"Jan Taubert"}, emails = {"jantaubert at users.sourceforge.net"}) public class Producer extends ProducerONDEXPlugin
@Authors(authors = {"Artem Lysenko"}, emails = {"lysenkoa at users.sourceforge.net"}) @Status(description = "Tested December 2013 (Artem Lysenko)", status = StatusType.STABLE) @Custodians(custodians = {"Jochen Weile"}, emails = {"jweile at users.sourceforge.net"}) public class Transformer extends ONDEXTransformer implements ArgumentNames {
@Authors(authors = {"Artem Lysenko"}, emails = {"lysenkoa at users.sourceforge.net"}) @Status(description = "Tested December 2013 (Artem Lysenko)", status = StatusType.STABLE) @Custodians(custodians = {"Jochen Weile"}, emails = {"jweile at users.sourceforge.net"}) public class Transformer extends ONDEXTransformer implements ArgumentNames {