/** read is filtered out if the javascript program returns false */ @Override public boolean filterOut(final SAMRecord record) { return !accept(record); }
public boolean filterOut(final SAMRecord record) { for (final SamRecordFilter filter : filters) { if (!filter.filterOut(record)) { return false; } } return true; } public boolean filterOut(final SAMRecord first, final SAMRecord second) {
/** * Determines whether a pair of SAMRecord matches this filter * * @param first the first SAMRecord to evaluate * @param second the second SAMRecord to evaluate * * @return true if the SAMRecords matches the filter, otherwise false */ @Override public boolean filterOut(final SAMRecord first, final SAMRecord second) { // only filter out the pair if both first and second reads have all As return (filterOut(first) && filterOut(second)); } }
/** * Determines whether a paired of SAMRecord matches this filter * * @param first the first SAMRecord to evaluate * @param second the second SAMRecord to evaluate * * @return true if the SAMRecords matches the filter, otherwise false */ public boolean filterOut(final SAMRecord first, final SAMRecord second) { // if either fails, exclude them both return (filterOut(first) || filterOut(second)); } }
/** * Determines whether a pair of SAMRecord matches this filter * * @param first the first SAMRecord to evaluate * @param second the second SAMRecord to evaluate * * @return true if both SAMRecords do not overlap the interval list */ @Override public boolean filterOut(final SAMRecord first, final SAMRecord second) { return filterOut(first) && filterOut(second); } }
public boolean filterOut(final SAMRecord first, final SAMRecord second) { for (final SamRecordFilter filter : filters) { if (!filter.filterOut(first, second)) { return false; } } return true; } }
/** * Determines whether a pair of SAMRecord matches this filter * * @param first the first SAMRecord to evaluate * @param second the second SAMRecord to evaluate * * @return true if the SAMRecords matches the filter, otherwise false */ public boolean filterOut(final SAMRecord first, final SAMRecord second) { // only filter out the pair if both first and second reads have all As return (filterOut(first) && filterOut(second)); } }
/** * Determines whether a paired of SAMRecord matches this filter * * @param first the first SAMRecord to evaluate * @param second the second SAMRecord to evaluate * * @return true if the SAMRecords matches the filter, otherwise false */ @Override public boolean filterOut(final SAMRecord first, final SAMRecord second) { // if either fails, exclude them both return (filterOut(first) || filterOut(second)); } }
/** * Determines whether a pair of SAMRecord matches this filter * * @param first the first SAMRecord to evaluate * @param second the second SAMRecord to evaluate * * @return true if both SAMRecords do not overlap the interval list */ @Override public boolean filterOut(final SAMRecord first, final SAMRecord second) { return filterOut(first) && filterOut(second); } }
/** read is filtered out if the javascript program returns false */ @Override public boolean filterOut(final SAMRecord record) { return !accept(record); }
/** * Determines whether a SAMRecord matches this filter * * @param record the SAMRecord to evaluate * @return true if the SAMRecord matches at least one filter, otherwise false */ public boolean filterOut(final SAMRecord record) { for (final SamRecordFilter filter : filters) { if (filter.filterOut(record)) { return true; } } return false; }
/** * Determines whether a paired of SAMRecord matches this filter * * @param first the first SAMRecord to evaluate * @param second the second SAMRecord to evaluate * * @return true if the SAMRecords matches the filter, otherwise false */ @Override public boolean filterOut(final SAMRecord first, final SAMRecord second) { // if either fails, exclude them both return (filterOut(first) || filterOut(second)); } }