How to use

getEvalue

method

in

uk.ac.ebi.interpro.scan.model.Hmmer3Match

public Object clone() throws CloneNotSupportedException {
  final Set<Hmmer3Location> clonedLocations = new HashSet<Hmmer3Location>(this.getLocations().size());
  for (Hmmer3Location location : this.getLocations()) {
    clonedLocations.add((Hmmer3Location) location.clone());
  }
  return new Hmmer3Match(this.getSignature(), this.getScore(), this.getEvalue(), clonedLocations);
}

private String getSeqEvalue(Match match, Location location) {
  //get the seevalue
  String seqEvalue = null;
  if (match instanceof PantherMatch) {
    seqEvalue = Double.toString(((PantherMatch) match).getEvalue());
  } else if (match instanceof Hmmer3Match) {
    seqEvalue = Double.toString(((Hmmer3Match) match).getEvalue());
  } else if (match instanceof Hmmer2Match) {
    seqEvalue = Double.toString(((Hmmer2Match) match).getEvalue());
  } else if (match instanceof Hmmer3MatchWithSites) {
    seqEvalue = Double.toString(((Hmmer3MatchWithSites) match).getEvalue());
  } else if (location instanceof RPSBlastMatch.RPSBlastLocation) {
    seqEvalue = Double.toString(((RPSBlastMatch.RPSBlastLocation) location).getEvalue());
  } else  if (location instanceof BlastProDomMatch.BlastProDomLocation) {
    seqEvalue = Double.toString(((BlastProDomMatch.BlastProDomLocation) location).getEvalue());
  } else if (match instanceof FingerPrintsMatch) {
    seqEvalue = Double.toString(((FingerPrintsMatch) match).getEvalue());
  } else if (match instanceof SuperFamilyHmmer3Match) {
    seqEvalue = Double.toString(((SuperFamilyHmmer3Match) match).getEvalue());
  }
  return seqEvalue;
}
private String getScore(Location location){