How to use

getSymbol

method

in

uk.ac.ebi.interpro.scan.model.DCStatus

private String getDomainRegion(LocationFragment locationFragment){
  String domainRegion = locationFragment.getStart() + "-" + locationFragment.getEnd() + "-" + locationFragment.getDcStatus().getSymbol();
  return domainRegion;
}

  rawDiscontinuousMatch.setLocFragmentDCStatus(fragmentDCStatus.getSymbol());
  newMatchesFromFragment.add(rawDiscontinuousMatch);
  continue;
PfamHmmer3RawMatch pfMatchRegionOne = getTempPfamHmmer3RawMatch(pfamHmmer3RawMatch, newLocationStart, newLocationEnd, fragmentDCStatus);
pfMatchRegionOne.setSplitGroup(splitGroup);
pfMatchRegionOne.setLocFragmentDCStatus(fragmentDCStatus.getSymbol());
newMatchesFromFragment.add(pfMatchRegionOne);
newLocationStart = fragment.getEnd() + 1;
  PfamHmmer3RawMatch pfMatchRegionTwo = getTempPfamHmmer3RawMatch(pfamHmmer3RawMatch, newLocationStart, finalLocationEnd, fragmentDCStatus);
  pfMatchRegionTwo.setSplitGroup(splitGroup);
  pfMatchRegionTwo.setLocFragmentDCStatus(fragmentDCStatus.getSymbol());
  newMatchesFromFragment.add(pfMatchRegionTwo);
  Utilities.verboseLog(verboseLevel," New Match for Region Two :" + pfMatchRegionTwo.toString());

private PfamHmmer3RawMatch getTempPfamHmmer3RawMatch(PfamHmmer3RawMatch rawMatch, int start, int end, DCStatus dcStatus) {
  final PfamHmmer3RawMatch match = new PfamHmmer3RawMatch(
      rawMatch.getSequenceIdentifier(),
      rawMatch.getModelId(),
      rawMatch.getSignatureLibrary(),
      rawMatch.getSignatureLibraryRelease(),
      start,
      end,
      rawMatch.getEvalue(),
      rawMatch.getScore(),
      rawMatch.getHmmStart(),
      rawMatch.getHmmEnd(),
      rawMatch.getHmmBounds(),
      rawMatch.getScore(),
      rawMatch.getEnvelopeStart(),
      rawMatch.getEnvelopeEnd(),
      rawMatch.getExpectedAccuracy(),
      rawMatch.getFullSequenceBias(),
      rawMatch.getDomainCeValue(),
      rawMatch.getDomainIeValue(),
      rawMatch.getDomainBias()
  );
  match.setLocFragmentDCStatus(dcStatus.getSymbol());
  return match;
}