How to use
ensureInitializedAliases
method
in
uk.ac.ebi.intact.core.persister.IntactCore

Best Java code snippets using uk.ac.ebi.intact.core.persister.IntactCore.ensureInitializedAliases (Showing top 6 results out of 315)

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private void myMethod () {
 ScheduledThreadPoolExecutor s =new ScheduledThreadPoolExecutor(corePoolSize)
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}

public static boolean containSameAliases(AnnotatedObject ao1, AnnotatedObject ao2) {
  return areCollectionEqual(IntactCore.ensureInitializedAliases(ao1), IntactCore.ensureInitializedXrefs(ao2));
}

public static boolean containSameAliases(AnnotatedObject ao1, AnnotatedObject ao2) {
  return areCollectionEqual(IntactCore.ensureInitializedAliases(ao1), IntactCore.ensureInitializedXrefs(ao2));
}

protected static void populateNames( AnnotatedObject<?, ?> annotatedObject, NamesContainer namesContainer ) {
  Names names = namesContainer.getNames();
  if ( names == null ) {
    names = new Names();
  }
  String shortLabel = annotatedObject.getShortLabel();
  String fullName = annotatedObject.getFullName();
  names.setShortLabel( shortLabel );
  names.setFullName( fullName );
  if ( !ConverterContext.getInstance().getInteractorConfig().isExcludeInteractorAliases() ) {
    AliasConverter aliasConverter = new AliasConverter( annotatedObject.getOwner(),
        AnnotatedObjectUtils.getAliasClassType( annotatedObject.getClass() ) );
    for ( Alias alias : IntactCore.ensureInitializedAliases(annotatedObject)) {
      names.getAliases().add( aliasConverter.intactToPsi( alias ) );
    }
  }
  namesContainer.setNames( names );
}

public static void populateNames( AnnotatedObject<?, ?> annotatedObject, NamesContainer namesContainer, AliasConverter aliasConverter ) {
  Names names = namesContainer.getNames();
  if ( names == null ) {
    names = new Names();
  }
  String shortLabel = annotatedObject.getShortLabel();
  String fullName = annotatedObject.getFullName();
  names.setShortLabel( shortLabel );
  names.setFullName( fullName );
  if ( !ConverterContext.getInstance().getInteractorConfig().isExcludeInteractorAliases() ) {
    Collection<? extends Alias> aliases;
    if (aliasConverter.isCheckInitializedCollections()){
      aliases = IntactCore.ensureInitializedAliases(annotatedObject);
    }
    else {
      aliases = annotatedObject.getAliases();
    }
    for ( Alias alias : aliases) {
      names.getAliases().add( aliasConverter.intactToPsi( alias ) );
    }
  }
  namesContainer.setNames( names );
}

Collection<? extends Alias> aliases = IntactCore.ensureInitializedAliases(ao);

Collection<? extends Alias> aliases = IntactCore.ensureInitializedAliases(ao);

Javadoc

Retrieves the aliases from an AnnotatedObject, initializing them if necessary.

Popular methods of IntactCore

ensureInitializedAnnotations
Retrieves the annotations from an AnnotatedObject, initializing them if necessary.
ensureInitializedComponentConfidences
Retrieves the confidences from a participant, initializing them if necessary. Do not set the initial
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Retrieves the parameters from a participant, initializing them if necessary. Do not set the initiali
ensureInitializedConfidences
Retrieves the confidences from an interaction, initializing them if necessary. Do not set the initia
ensureInitializedExperimentalPreparations
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ensureInitializedExperimentalRoles
Retrieves the experimental roles from a participant, initializing them if necessary. Do not set the
ensureInitializedExperiments
Retrieves the experiment from a publication, initializing them if necessary.
ensureInitializedFeatures
Retrieves the features from a participant, initializing them if necessary. Do not set the initialize
ensureInitializedInteractionParameters
Retrieves the parameters from an interaction, initializing them if necessary. Do not set the initial
ensureInitializedParticipantIdentificationMethods
Retrieves the participant detection methods from a participant, initializing them if necessary. Do n
ensureInitializedParticipants
Retrieves the components from an interaction, initializing them if necessary. Do not set the initial
ensureInitializedRanges
Retrieves the ranges from a feature, initializing them if necessary.

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How to use ensureInitializedAliasesmethodin uk.ac.ebi.intact.core.persister.IntactCore

Best Java code snippets using uk.ac.ebi.intact.core.persister.IntactCore.ensureInitializedAliases (Showing top 6 results out of 315)

How to use
ensureInitializedAliases
method
in
uk.ac.ebi.intact.core.persister.IntactCore