How to use

uk.ac.ebi.intact.bridges.ontologies.OntologyDocument

constructor

private OntologyDocument createParentChildRelationship(String id, String name, Set<String> childSynonyms,
                            String parentId, String parentName, Set<String> parentSynonyms,
                            String relationshipType, boolean cyclicRelationship) {
  final OntologyDocument ontologyDocument = new OntologyDocument(ontology, parentId, parentName, id, name, relationshipType, cyclicRelationship);
  ontologyDocument.addAllChildSynonyms(childSynonyms);
  ontologyDocument.addAllParentSynonyms(parentSynonyms);
  return ontologyDocument;
}

OntologyDocument doc = new OntologyDocument("uniprot taxonomy", parentId, parentName,
    childId, childName, "OBO_REL:is_a", false);

String[] childSynonym = childSynonymsAsStr.split(OntologyIndexWriter.SYNONYM_SEPARATOR);
final OntologyDocument ontologyDocument = new OntologyDocument(ontology, parentId, parentName, childrenId, childrenName, relationshipType, cyclic);
ontologyDocument.addAllParentSynonyms(parentSynonyms);
ontologyDocument.addAllChildSynonyms(childSynonym);