public static void check( final ProteinParticipantTag proteinParticipant, final UpdateProteinsI proteinFactory, final BioSourceFactory bioSourceFactory ) { final String role = proteinParticipant.getRole(); RoleChecker.check( role ); final ProteinInteractorTag proteinInteractor = proteinParticipant.getProteinInteractor(); ProteinInteractorChecker.check( proteinInteractor, proteinFactory, bioSourceFactory ); final Collection features = proteinParticipant.getFeatures(); for ( Iterator iterator = features.iterator(); iterator.hasNext(); ) { FeatureTag feature = (FeatureTag) iterator.next(); FeatureChecker.ckeck( feature ); } // check feature clustering (specific to PSI version 1) try { proteinParticipant.getClusteredFeatures(); } catch ( IllegalArgumentException iae ) { MessageHolder.getInstance().addCheckerMessage( new Message( "An error occured while checking if the feature were clusterizable: " + iae.getMessage() ) ); } // TODO check isOverExpressed // TODO check isTaggedProtein: as we have to create a Feature having CvFeatureType(tagged-protein) with undetermined range } }
public static void check( final ProteinParticipantTag proteinParticipant, final UpdateProteinsI proteinFactory, final BioSourceFactory bioSourceFactory ) { final String role = proteinParticipant.getRole(); RoleChecker.check( role ); final ProteinInteractorTag proteinInteractor = proteinParticipant.getProteinInteractor(); ProteinInteractorChecker.check( proteinInteractor, proteinFactory, bioSourceFactory ); final Collection features = proteinParticipant.getFeatures(); for ( Iterator iterator = features.iterator(); iterator.hasNext(); ) { FeatureTag feature = (FeatureTag) iterator.next(); FeatureChecker.ckeck( feature ); } // check feature clustering (specific to PSI version 1) try { proteinParticipant.getClusteredFeatures(); } catch ( IllegalArgumentException iae ) { MessageHolder.getInstance().addCheckerMessage( new Message( "An error occured while checking if the feature were clusterizable: " + iae.getMessage() ) ); } // TODO check isOverExpressed // TODO check isTaggedProtein: as we have to create a Feature having CvFeatureType(tagged-protein) with undetermined range } }
public static void check( final ProteinParticipantTag proteinParticipant, final UpdateProteinsI proteinFactory, final BioSourceFactory bioSourceFactory ) { final String role = proteinParticipant.getRole(); RoleChecker.check( role ); final ProteinInteractorTag proteinInteractor = proteinParticipant.getProteinInteractor(); ProteinInteractorChecker.check( proteinInteractor, proteinFactory, bioSourceFactory ); final Collection features = proteinParticipant.getFeatures(); for ( Iterator iterator = features.iterator(); iterator.hasNext(); ) { FeatureTag feature = (FeatureTag) iterator.next(); FeatureChecker.ckeck( feature ); } // check feature clustering (specific to PSI version 1) try { proteinParticipant.getClusteredFeatures(); } catch ( IllegalArgumentException iae ) { MessageHolder.getInstance().addCheckerMessage( new Message( "An error occured while checking if the feature were clusterizable: " + iae.getMessage() ) ); } // TODO check isOverExpressed // TODO check isTaggedProtein: as we have to create a Feature having CvFeatureType(tagged-protein) with undetermined range } }
if ( psiComponent.hasFeature() ) { sb.append( ", Feature[" ); for ( Iterator iterator3 = psiComponent.getFeatures().iterator(); iterator3.hasNext(); )
if ( psiComponent.hasFeature() ) { sb.append( ", Feature[" ); for ( Iterator iterator3 = psiComponent.getFeatures().iterator(); iterator3.hasNext(); )
if ( psiComponent.hasFeature() ) { sb.append( ", Feature[" ); for ( Iterator iterator3 = psiComponent.getFeatures().iterator(); iterator3.hasNext(); )
Collection features = proteinParticipant.getFeatures(); for ( Iterator iterator = features.iterator(); iterator.hasNext(); ) { FeatureTag featureTag = (FeatureTag) iterator.next();
Collection features = proteinParticipant.getFeatures(); for ( Iterator iterator = features.iterator(); iterator.hasNext(); ) { FeatureTag featureTag = (FeatureTag) iterator.next();
Collection features = proteinParticipant.getFeatures(); for ( Iterator iterator = features.iterator(); iterator.hasNext(); ) { FeatureTag featureTag = (FeatureTag) iterator.next();