Public

<init>

getAnnotations

getConfidence

getExperiments

getFullname

getInteractionType

getParticipants

getShortlabel

getXrefs

InteractionTag

Making http requests using okhttp

Convenience class for writing character files. The constructors of this class
assume that the defaul

java.io.FileWriter

Allows reading from and writing to a file in a random-access manner. This is
different from the uni-

java.io.RandomAccessFile

A task that can be scheduled for one-time or repeated execution by a Timer.

java.util.TimerTask

An ExecutorService that executes each submitted task using one of possibly
several pooled threads, n

java.util.concurrent.ThreadPoolExecutor

A filter is an object that performs filtering tasks on either the request to a
resource (a servlet o

javax.servlet.Filter

General IO stream manipulation utilities. This class provides static utility
methods for input/outpu

org.apache.commons.io.IOUtils

getExternalFilesDir

runOnUiThread

Return the FragmentManager for interacting with fragments associated with this
activity.

getSupportFragmentManager

// check that the CvInteractorType( interaction is available ).

// TODO do we have to check that we have at least 1 bait and 1..m preys/neutrals

// 0 or 1 dissociation constant can be specified, no more.

// TODO find a way to indicate to the user which interaction we are talking about

"More than one dissociation constant specified "

"in an Interaction (one at most is allowed)."

/**
 * Persist the Interaction according to its PSI description. A Shortlabel is automatically generated based on
 * the gene names of the participant, if no gene name are available we use the protein AC. An Interaction
 * can be linked to multiple experiment in PSI, we do take it into account and we manages cases where an interaction
 * already exists, attached to one Experiment (let's call it E1) and the same interaction is also declared in the
 * PSI file as interacting in E1 and E2, in which case we just create an extra interaction and link it to E2. 
 * So far, we do not automatically link several Experiment to a single Interaction using the PSI loader. 
 *
 * @param interactionTag the PSI definition of the Interaction
 *
 * @return the collection of created IntAct Interaction.
 *
 * @throws IntactException if an error occurs while persisting the data in IntAct.
 */

// that updates the experiment collection and only leaves those for which we have to create a new interaction

// LOOP HERE OVER THE RESULT COLLECTION(shortlabel, experiment)

/* Components
            * The way to create an Interaction is NOT TRIVIAL: we have firstly to create an
            * Interaction Object with an empty collection of Component. and Then we have to
            * use the interaction.addComponent( Component c ) to fill it up.
            */

// check if there is a Kd value available

// search for an annotation to re-use, instead of creating a new one.

// doesn't exist, then create a new Annotation

// no need for an else, the additional annotation topic have been controlled by the checker.

// TODO clean that thing. Right now we are most of the time stuffing the author confidence as annotation

// TODO look after that unit parameter, we might have to adapt the CvTopic accordingly later.

// check if that annotation could not be shared.

How to use getInteractionTypemethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.model.InteractionTag

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.model.InteractionTag.getInteractionType (Showing top 6 results out of 315)

How to use
getInteractionType
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.model.InteractionTag