Public

<init>

equals

getAdditionalBibRef

getAnnotations

getBibRef

getFullname

getHostOrganism

getInteractionDetection

getParticipantDetection

getShortlabel

getXrefs

ExperimentDescriptionTag

Updating database using SQL prepared statement

java.net.Socket

The abstract class URLConnection is the superclass of all classes that represent
a communications li

java.net.URLConnection

A collection designed for holding elements prior to processing. Besides basic
java.util.Collection o

java.util.Queue

The annotation structure.An instance of this class is returned bygetAnnotations() in AnnotationsAttr

javassist.bytecode.annotation.Annotation

org.hamcrest.core.IsNull

Encapsulate an XML parse error or warning.This exception may include information
for locating the er

org.xml.sax.SAXParseException

getSystemService

Compares this BigDecimal with the specified BigDecimal. Two BigDecimal objects
that are equal in val

compareTo

requestLocationUpdates

/**
 * Allows to check if the data carried by an InteractionTag are already existing in the IntAct node.
 * <pre>
 * Reminder:
 * - an interaction (as a set of components) must be unique in the experiment scope.
 * - the shortlabel of an interaction must be unique in the database scope.
 * 
 * Logic sketch:
 * If there is an experiment in commons between the data declare in PSI and those existing in Intact
 * - Compare the conponent of the two interactions
 * - if the same: the PSI interaction has already an instance in IntAct for that experiment
 * - if not the same: compare with the next interaction (if there is one)
 * - if no more interaction: the PSI interaction doesn't have an instance in IntAct
 * for that experiment.
 * </pre>
 *
 * @param psi the PSI data materialised as an Object.
 * @param intactInteraction an Intact Interaction.
 * @param experiments it reflects the collection of experiments linked to the PSI interaction and we will
 * update it in order to leave only those for which we need to create a new interaction.
 */

// this is in theory a pretty heavy computation but in practice an interaction rarely have many experiments

// and few interaction have a lot of components.

// compare two experiments using their shortlabel as they should be unique.

// they are the same ... check on the conponents

"They are equals ! Check on their participants..."

"Before intactComponent.getBindingDomains().size() = "

//WARNING : if we do not reload the Component using the helper, it does not find

// the feature on the component (intactComponent.getBindingDomains.size() return null)

// even if in the dabase the Component is associated to a Feature

// special case, a same protein can be bait and prey in the same interaction.

// Hence, we have to browse the whole intact Component set until we find the

// no need to carry on to check the psi component set because now, we know that

// there is already an instance of that interaction in intact

"All component(protein+role+feature) have been found, hence there "

"is an instance of that interaction in intact"

"and involving the following components: "

How to use equalsmethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.model.ExperimentDescriptionTag

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How to use
equals
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uk.ac.ebi.intact.application.dataConversion.psiUpload.model.ExperimentDescriptionTag