How to use
getIdentityQualifier
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ControlledVocabularyRepository

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ControlledVocabularyRepository.getIdentityQualifier (Showing top 7 results out of 315)

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}

CvXrefQualifier identity = ControlledVocabularyRepository.getIdentityQualifier();

if ( ControlledVocabularyRepository.getIdentityQualifier().equals( xref.getCvXrefQualifier() ) )

if ( ControlledVocabularyRepository.getIdentityQualifier().equals( xref.getCvXrefQualifier() ) )

if ( ControlledVocabularyRepository.getIdentityQualifier().equals( xref.getCvXrefQualifier() ) )

private static void createXref( Protein protein,
                XrefTag xrefTag,
                boolean identity ) throws IntactException {
  CvXrefQualifier qualifier = null;
  if ( identity ) {
    qualifier = ControlledVocabularyRepository.getIdentityQualifier();
  }
  CvDatabase database = XrefChecker.getCvDatabase( xrefTag.getDb() );
  if ( database == null ) {
    // failed to find the database, skip the Xref creation
  } else {
    InteractorXref xref = new InteractorXref( IntactContext.getCurrentInstance().getInstitution(),
               database,
               xrefTag.getId(),
               xrefTag.getSecondary(),
               xrefTag.getVersion(),
               qualifier );
    protein.addXref( xref );
    IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
  }
}

private static void createXref( Protein protein,
                XrefTag xrefTag,
                boolean identity ) throws IntactException {
  CvXrefQualifier qualifier = null;
  if ( identity ) {
    qualifier = ControlledVocabularyRepository.getIdentityQualifier();
  }
  CvDatabase database = XrefChecker.getCvDatabase( xrefTag.getDb() );
  if ( database == null ) {
    // failed to find the database, skip the Xref creation
  } else {
    InteractorXref xref = new InteractorXref( IntactContext.getCurrentInstance().getInstitution(),
               database,
               xrefTag.getId(),
               xrefTag.getSecondary(),
               xrefTag.getVersion(),
               qualifier );
    protein.addXref( xref );
    IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
  }
}

private static void createXref( Protein protein,
                XrefTag xrefTag,
                boolean identity ) throws IntactException {
  CvXrefQualifier qualifier = null;
  if ( identity ) {
    qualifier = ControlledVocabularyRepository.getIdentityQualifier();
  }
  CvDatabase database = XrefChecker.getCvDatabase( xrefTag.getDb() );
  if ( database == null ) {
    // failed to find the database, skip the Xref creation
  } else {
    InteractorXref xref = new InteractorXref( IntactContext.getCurrentInstance().getInstitution(),
               database,
               xrefTag.getId(),
               xrefTag.getSecondary(),
               xrefTag.getVersion(),
               qualifier );
    protein.addXref( xref );
    IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );
  }
}

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How to use getIdentityQualifiermethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ControlledVocabularyRepository

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ControlledVocabularyRepository.getIdentityQualifier (Showing top 7 results out of 315)

How to use
getIdentityQualifier
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.checker.ControlledVocabularyRepository