uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interactor2xmlPSI25.getInteractorId java code examples

Common ways to obtain Interactor2xmlPSI25

private void myMethod () {
 Interactor2xmlPSI25 i =Conversion.psiDownload.xmlGenerator.psi25.Interactor2xmlPSI25 interactor2xmlPSI25;interactor2xmlPSI25.getInstance()
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}

/**
 * Generates an participantRef out of an IntAct interactor.
 *
 * @param session
 * @param parent     the Element to which we will add the participantRef.
 * @param interactor the IntAct interactor that we convert to PSI.
 *
 * @return the generated participantRef Element.
 */
public Element createParticipantReference( UserSessionDownload session, Element parent, Interactor interactor ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  if ( interactor == null ) {
    throw new IllegalArgumentException( "You must give a non null protein to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  // 2. Initialising the element...
  Element element = session.createElement( INTERACTOR_REF_TAG_NAME );
  element.setAttribute( "ref", getInteractorId( session, interactor ) );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

/**
 * Generates an participantRef out of an IntAct interactor.
 *
 * @param session
 * @param parent     the Element to which we will add the participantRef.
 * @param interactor the IntAct interactor that we convert to PSI.
 *
 * @return the generated participantRef Element.
 */
public Element createParticipantReference( UserSessionDownload session, Element parent, Interactor interactor ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  if ( interactor == null ) {
    throw new IllegalArgumentException( "You must give a non null protein to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  // 2. Initialising the element...
  Element element = session.createElement( INTERACTOR_REF_TAG_NAME );
  element.setAttribute( "ref", getInteractorId( session, interactor ) );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

/**
 * Generates an participantRef out of an IntAct interactor.
 *
 * @param session
 * @param parent     the Element to which we will add the participantRef.
 * @param interactor the IntAct interactor that we convert to PSI.
 *
 * @return the generated participantRef Element.
 */
public Element createParticipantReference( UserSessionDownload session, Element parent, Interactor interactor ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  if ( interactor == null ) {
    throw new IllegalArgumentException( "You must give a non null protein to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  // 2. Initialising the element...
  Element element = session.createElement( INTERACTOR_REF_TAG_NAME );
  element.setAttribute( "ref", getInteractorId( session, interactor ) );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

/**
 * Generates an interactorRef out of an IntAct interactor.
 *
 * @param session
 * @param parent     the Element to which we will add the interactorRef.
 * @param interactor the IntAct interactor that we convert to PSI.
 *
 * @return the generated interactorRef Element.
 */
public Element createInteractorReference( UserSessionDownload session, Element parent, Interactor interactor ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  if ( interactor == null ) {
    throw new IllegalArgumentException( "You must give a non null protein to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  // 2. Initialising the element...
  Element element = session.createElement( INTERACTOR_REF_TAG_NAME );
  Text refText = session.createTextNode( getInteractorId( session, interactor ) );
  element.appendChild( refText );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

/**
 * Generates an interactorRef out of an IntAct interactor.
 *
 * @param session
 * @param parent     the Element to which we will add the interactorRef.
 * @param interactor the IntAct interactor that we convert to PSI.
 *
 * @return the generated interactorRef Element.
 */
public Element createInteractorReference( UserSessionDownload session, Element parent, Interactor interactor ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  if ( interactor == null ) {
    throw new IllegalArgumentException( "You must give a non null protein to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  // 2. Initialising the element...
  Element element = session.createElement( INTERACTOR_REF_TAG_NAME );
  Text refText = session.createTextNode( getInteractorId( session, interactor ) );
  element.appendChild( refText );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

/**
 * Generates an interactorRef out of an IntAct interactor.
 *
 * @param session
 * @param parent     the Element to which we will add the interactorRef.
 * @param interactor the IntAct interactor that we convert to PSI.
 *
 * @return the generated interactorRef Element.
 */
public Element createInteractorReference( UserSessionDownload session, Element parent, Interactor interactor ) {
  // TODO test that.
  // 1. Checking...
  if ( session == null ) {
    throw new IllegalArgumentException( "You must give a non null UserSessionDownload." );
  }
  if ( parent == null ) {
    throw new IllegalArgumentException( "You must give a non null parent to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  if ( interactor == null ) {
    throw new IllegalArgumentException( "You must give a non null protein to build an " + INTERACTOR_REF_TAG_NAME + "." );
  }
  // 2. Initialising the element...
  Element element = session.createElement( INTERACTOR_REF_TAG_NAME );
  Text refText = session.createTextNode( getInteractorId( session, interactor ) );
  element.appendChild( refText );
  // 3. Attaching the newly created element to the parent...
  parent.appendChild( element );
  return element;
}

element.setAttribute( "id", getInteractorId( session, interactor ) );

element.setAttribute( "id", getInteractorId( session, interactor ) );

element.setAttribute( "id", getInteractorId( session, interactor ) );

Javadoc

get the value what will be used as ID of the protein.

Popular methods of Interactor2xmlPSI25

create
Generated an interactor out of an IntAct Experiment.
createAttributeList
createInteractorReference
Generates an interactorRef out of an IntAct interactor.
createNames
createXrefs
Generate the xref tag of the given interactor. That content is attached to the given parent Element.
getInstance

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How to use getInteractorIdmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interactor2xmlPSI25

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interactor2xmlPSI25.getInteractorId (Showing top 9 results out of 315)

How to use
getInteractorId
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Interactor2xmlPSI25