Public

ckeckExperimentParentName

createAttributeList

generate the bibliographical reference of the Experiment out of the Xref having
the CvDatabase pubme

createBibRef

createConfidence

Generate and add to the given element the Xrefs of the experiment (but no
pubmed). 
The given set of

createExperimentXrefs

createNames

get the value what will be used as ID of the experiment.

getExperimentId

getInstance

OutputStreamWriter

Making http requests using okhttp

HashMap is an implementation of Map. All optional operations are supported.All
elements are permitte

java.util.HashMap

A map that has its keys ordered. The sorting is according to either the natural
ordering of its keys

java.util.SortedMap

A Set that further provides a total ordering on its elements. The elements are
ordered using their C

java.util.SortedSet

javax.swing.JComboBox

XPath provides access to the XPath evaluation environment and expressions.

Evaluation of XPath Expr

javax.xml.xpath.XPath

General IO stream manipulation utilities. This class provides static utility
methods for input/outpu

org.apache.commons.io.IOUtils

runOnUiThread

Compares this BigDecimal with the specified BigDecimal. Two BigDecimal objects
that are equal in val

compareTo

Return the original filename in the client's filesystem.This may contain path
information depending 

getOriginalFilename

/**
     * Generated an experimentDescription out of an IntAct Experiment.
     *
     * @param session
     * @param parent     the Element to which we will add the experimentDescription.
     * @param experiment the IntAct experiment that we convert to PSI.
     *
     * @return the generated experimentDescription Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an experimentDescription."

"You must give a <experimentList> to build a "

"You must give a non null Experiment to build an experimentDescription."

//       names bibref xref hostOrganism interactionDetectionMethod participantIdentificationMethod

//       featureDetectionMethod confidenceList attributeList

//       sampleProcess                    -- should be deleted 

// TODO what if no pubmed Xref ... no bibRef section ?

// TODO and an attributeList is now attached to the bibRef

// 7. Generating OPTIONAL interactionDetectionMethod ... mapped to Experiment.CvInteraction.

// 8. Generating OPTIONAL participantIdentificationMethod ... mapped to Experiment.CvIdentification.

// note: it was called participantDetection in PSI1

// 9. Generating OPTIONAL featureDetectionMethod...

// note: it was called featureDetection in PSI1

// actually, we have (so far) nothing like that in the IntAct Experiment object ... skip that tag.

// 11. Generating attributeList (if any)...

// 12. Attaching the newly created element to the parent...

How to use createBibRefmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Experiment2xmlPSI25

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How to use
createBibRef
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi25.Experiment2xmlPSI25