Public

createAttributeList

createAvailability

createConfidence

createDissociationConstant

Generate the xref tag of the given protein. That content is attached to the
given parent Element. 
 

createInteractionXrefs

createNames

createNegativeFlag

createParticipant

getInstance

OutputStreamWriter

Parsing JSON documents to java classes using gson

A collection that associates an ordered pair of keys, called a row key and a
column key, with a sing

com.google.common.collect.Table

Wraps an existing InputStream and buffers the input. Expensive interaction with
the underlying input

java.io.BufferedInputStream

Represents a command that can be executed. Often used to run code in a different
Thread.

java.lang.Runnable

This class represents an in-memory collection of keys and certificates. It
manages two types of entr

java.security.KeyStore

DecimalFormat is a concrete subclass ofNumberFormat that formats decimal
numbers. It has a variety o

java.text.DecimalFormat

Main entry-point into the library.

Options represents a collection of Option objects, which describ

org.apache.commons.cli.Options

setScale

Return the FragmentManager for interacting with fragments associated with this
activity.

getSupportFragmentManager

getContentResolver

/**
     * Generated an interaction out of an IntAct Interaction.
     *
     * @param session
     * @param parent      the Element to which we will add the proteinInteractor.
     * @param interaction the IntAct Interaction that we convert to PSI.
     *
     * @return the generated interaction Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an "

"You must give a <interactionList> to build a "

"You must give a non null Interaction to build an "

// we start participant id from scratch again

//        session.resetParticipantIdentifier();

//       availabilityRef [or] availability

// only generate it if the definition doesn't exist.

// add the experiment definition to the global list of experiments

// add an experimentRef to the local list.

//    this is actually done at the same time that participantList

// 9. Generating inferredInteractionList...

// todo check that we are not generating it twice !!

// check that we are not generating several times the same features

// we already have generated that inferred interaction, skip it.

// that feature binds to an other one ... generate an Inferred interaction.

// CvInteractionType is optional in the intact model.

// if interaction or experiment is negative (Annotation), true, otherwise false.

How to use createInteractionXrefsmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Interaction2xmlPSI2

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Interaction2xmlPSI2.createInteractionXrefs (Showing top 3 results out of 315)

How to use
createInteractionXrefs
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Interaction2xmlPSI2