Public

Create the experimentalForm corresponding to the participant we are being given
the participantId.

createExperimentalForm

Generate the XML content of a proteinParticipant as well as the experimentalForm
based on the given 

createProteinExperimentalForm

Generate the XMl content of a proteinParticipant as well as the experimentalForm
based on the given 

createProteinParticipant

Generate the XMl content of a SmallMolecule based on the given component.

createSmallMoleculeParticipant

getInstance

get the value what will be used as ID of the experiment.

getParticipantId

Check that the given feature type is a tag.

isTaggedFeature

Point

Reactive rest calls using spring rest template

A collection that associates an ordered pair of keys, called a row key and a
column key, with a sing

com.google.common.collect.Table

This class implements a simple HTTP server. A HttpServer is bound to an IP
address and port number a

com.sun.net.httpserver.HttpServer

Immutable arbitrary-precision integers. All operations behave as if BigIntegers
were represented in 

java.math.BigInteger

HashMap is an implementation of Map. All optional operations are supported.All
elements are permitte

java.util.HashMap

 JarFile is used to read jar entries and their associated data from jar files.

java.util.jar.JarFile

Provides Base64 encoding and decoding as defined by RFC 2045.This class
implements section 6.8. Base

org.apache.commons.codec.binary.Base64

notifyDataSetChanged

onRequestPermissionsResult

getSystemService

/**
     * Generated an interaction out of an IntAct Interaction.
     *
     * @param session
     * @param parent      the Element to which we will add the proteinInteractor.
     * @param interaction the IntAct Interaction that we convert to PSI.
     *
     * @return the generated interaction Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an "

"You must give a <interactionList> to build a "

"You must give a non null Interaction to build an "

// we start participant id from scratch again

//        session.resetParticipantIdentifier();

//       availabilityRef [or] availability

// only generate it if the definition doesn't exist.

// add the experiment definition to the global list of experiments

// add an experimentRef to the local list.

//    this is actually done at the same time that participantList

// 9. Generating inferredInteractionList...

// todo check that we are not generating it twice !!

// check that we are not generating several times the same features

// we already have generated that inferred interaction, skip it.

// that feature binds to an other one ... generate an Inferred interaction.

// CvInteractionType is optional in the intact model.

// if interaction or experiment is negative (Annotation), true, otherwise false.

How to use createExperimentalFormmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Component2xmlPSI2

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How to use
createExperimentalForm
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi2.Component2xmlPSI2