/** * get the value what will be used as ID of the experiment. * * @param experiment the experiment for which we need an ID. * * @return the ID of the experiment. */ private String getExperimentId( Experiment experiment ) { return Experiment2xmlCommons.getInstance().getExperimentId( experiment ); }
/** * get the value what will be used as ID of the experiment. * * @param experiment the experiment for which we need an ID. * * @return the ID of the experiment. */ private String getExperimentId( Experiment experiment ) { return Experiment2xmlCommons.getInstance().getExperimentId( experiment ); }
/** * get the value what will be used as ID of the experiment. * * @param experiment the experiment for which we need an ID. * * @return the ID of the experiment. */ private String getExperimentId( Experiment experiment ) { return Experiment2xmlCommons.getInstance().getExperimentId( experiment ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * Generate and add to the given element the Xrefs of the experiment (but no pubmed). <br> The given set of pubmed * Xref is used to filter those not to generate again. * * @param session * @param element The element to which we add the xref tag and its content. * @param experiment the IntAct experiment from which we get the Xrefs. * @param pubmedXrefs the Xrefs that have already been generated. Is not null, but can be empty. */ private void createExperimentXrefs( UserSessionDownload session, Element element, Experiment experiment, Collection pubmedXrefs ) { Experiment2xmlCommons.getInstance().createExperimentXrefs( session, element, experiment, pubmedXrefs ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { // TODO in PSI2 we can have an attributeList attached to the bibRef return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { // TODO in PSI2 we can have an attributeList attached to the bibRef return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { // TODO in PSI2 we can have an attributeList attached to the bibRef return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { // TODO in PSI2 we can have an attributeList attached to the bibRef return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }
/** * generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubmed. We * distinguish primary and secondaryRef using the CvXrefQualifier of the Xref: primary-reference gives the * primaryRef and see-also gives the secondaryRef. * * @param session * @param parent the element to which we will add the bibRef. * @param experiment the experiment from which we get the Xrefs. * * @return the subset of the Experiment's Xref out of which we have generated the bibRef. Never null but can be * empty. */ private Collection createBibRef( UserSessionDownload session, Element parent, Experiment experiment ) { // TODO in PSI2 we can have an attributeList attached to the bibRef return Experiment2xmlCommons.getInstance().createBibRef( session, parent, experiment ); }