Public

<init>

addMessage

createElement

createTextNode

Declare in the session that the given protein has been already converted in XML.

declareAlreadyDefined

Load all CvTopic and check which one have been flagged 'obsolete'. Those CvTopic
are automatically a

filterObsoleteAnnotationTopic

Return the availabilityList element under the entry of the PSI document. If the
element doesn't exis

getAvailabilityListElement

getCvObjectCache

Return the entry element of the PSI document. If the element doesn't exist, it
is created.

getEntryElement

Get a specific identifier for the given experiemnt. If an identifier had already
been affected for t

getExperimentIdentifier

Return the experimentList element under the entry of the PSI document. If the
element doesn't exist,

getExperimentListElement

Get a specific identifier for the given feature. If an identifier had already
been affected for that

getFeatureIdentifier

getHostOrganismCache

Get a specific identifier for the given interaction. If an identifier had
already been affected for 

getInteractionIdentifier

Return the interactionList element under the entry of the PSI document. If the
element doesn't exist

getInteractionListElement

Get a specific identifier for the given interactor. If an identifier had already
been affected for t

getInteractorIdentifier

Return the interactorList element under the entry of the PSI document. If the
element doesn't exist,

getInteractorListElement

getMessages

return the current cluster ID suffix and increment it by 1.

getNextClusterIdSuffix

Return the next unique identifier required by most PSI-MI objects

getNextObjectIdentifier

UserSessionDownload

Updating database using SQL prepared statement

Convenience class for writing character files. The constructors of this class
assume that the defaul

java.io.FileWriter

A parser that parses a text string of primitive types and strings with the help
of regular expressio

java.util.Scanner

A TimeUnit represents time durations at a given unit of granularity and provides
utility methods to 

java.util.concurrent.TimeUnit

javax.swing.JTextField

Basic implementation of javax.sql.DataSource that is configured via JavaBeans
properties. This is no

org.apache.commons.dbcp.BasicDataSource

scala.Option

getExternalFilesDir

Compares this BigDecimal with the specified BigDecimal. Two BigDecimal objects
that are equal in val

compareTo

putExtra

/**
     * Generated an interaction out of an IntAct Interaction.
     *
     * @param session
     * @param parent      the Element to which we will add the proteinInteractor.
     * @param interaction the IntAct Interaction that we convert to PSI.
     *
     * @return the generated interaction Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an "

"You must give a <interactionList> to build a "

"You must give a non null Interaction to build an "

// we start participant/feature id from scratch again

// nope we do not do that anymore in the context of PSI 2.5 release candidate

//       availabilityRef [or] availability

//       experimentalFormList     <----- !!!!

//       modelled                                +++++

//       intraMolecular                          +++++

//       parameterList                           +++++ CvKinetic

// only generate it if the definition doesn't exist.

// add the experiment definition to the global list of experiments

// add an experimentRef to the local list.

//    this is actually done at the same time that participantList

// 9. Generating inferredInteractionList...

// todo check that we are not generating it twice !!

// that feature doesn't interact with an other one, skip it.

// check that we are not generating several times the same features

// we already have generated that inferred interaction, skip it.

// that feature binds to an other one ... generate an Inferred interaction.

// we start participant id from scratch again

//        session.resetParticipantIdentifier();

// CvInteractionType is optional in the intact model.

// if interaction or experiment is negative (Annotation), true, otherwise false.

How to use getInteractionIdentifiermethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload.getInteractionIdentifier (Showing top 6 results out of 315)

How to use
getInteractionIdentifier
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.UserSessionDownload