Public

<init>

Add an association into the map. It takes care of :  *  circular mapping (a term to itself)
 *  mapp

addMapping

If there is a mapping available, replace the given CV by an other one.

getPSI2toPSI1

Extract from the given CV term its PSI-MI id (if any).

getPsiReference

getSimpleName

Load a tabulation separated flat file having the following format: 
<MI:1>   <shortalbel1>   <MI:2> 

loadFile

Load mapping from a serialized file. The format is as follow: 
<Integer> count of associations 
<CvO

loadSerializedMap

Serialize the CV mapping into a file. 
<Integer> count of associations 
<CvObject> from 
<CvObject> 

serializeMapping

CvMapping

Reading from database using SQL prepared statement

Represents a command that can be executed. Often used to run code in a different
Thread.

java.lang.Runnable

A thread is a thread of execution in a program. The Java Virtual Machine allows
an application to ha

java.lang.Thread

This class represents a server-side socket that waits for incoming client
connections. A ServerSocke

java.net.ServerSocket

This class represents an in-memory collection of keys and certificates. It
manages two types of entr

java.security.KeyStore

javax.naming.Reference

Defines methods that all servlets must implement.A servlet is a small Java
program that runs within 

javax.servlet.Servlet

addToBackStack

findViewById

Return the FragmentManager for interacting with fragments associated with this
activity.

getSupportFragmentManager

/**
     * Load a tabulation separated flat file having the following format:
     * <pre>
     *         &lt;MI:1&gt;   &lt;shortalbel1&gt;   &lt;MI:2&gt; &lt;shortalbel2&gt;
     * <p/>
     * &lt;MI:1&gt;         : PSI MI reference of the PSI2 term
     * &lt;shortalbel1&gt;  : shortlabel of the PSI2 term (only for clarity)
     * &lt;MI:2&gt;         : PSI MI reference of the PSI1 term
     * &lt;shortalbel2&gt;  : shortlabel of the PSI1 term (only for clarity)
     * <p/>
     * notes:
     *         - all blank lines are skipped
     *         - all lines starting with # are considered as comments (hence skipped)
     *         - if &lt;MI:1&gt; is a star ('*') we load all the terms, picking the type based on &lt;MI:2&gt;'s
     *         - if &lt;MI:2&gt; is a star ('*') we load all the terms, picking the type based on &lt;MI:1&gt;'s
     * </pre>
     *
     * @param file
     *
     * @return
     */

// either they are both MI, or one of them is MI and the orher a STAR.

// get the class from the other MI ref, and filter using it instead of CvObject

// it was a star, hence check our the type of toCvObject

// it was a star, hence check our the type of fromCvObject

// try to cache the map on disk for later use.

How to use serializeMappingmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.CvMapping

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How to use
serializeMapping
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.CvMapping