Public

<init>

getAc

getCreated

getShortLabel

OutputStreamWriter

Reactive rest calls using spring rest template

This class represents an in-memory collection of keys and certificates. It
manages two types of entr

java.security.KeyStore

A class which can consume and produce dates in SQL Date format. Dates are
represented in SQL as yyyy

java.sql.Date

Java representation of an SQL TIME value. Provides utilities to format and parse
the time's represen

java.sql.Time

The Properties class represents a persistent set of properties. The Properties 
can be saved to a st

java.util.Properties

javax.swing.JLabel

Central representation of an Ant project. This class defines an Ant project with
all of its targets,

org.apache.tools.ant.Project

scheduleAtFixedRate

findViewById

notifyDataSetChanged

/**
     * Classify experiments matching searchPattern into a data structure according to species and experiment size.
     *
     * @return HashMap of HashMap of ArrayLists of Experiments: {species}{scale}[n]
     *
     * @throws uk.ac.ebi.intact.business.IntactException
     *
     */

// TODO separate classification - one method per type of classification !

// Obtain data, probably experiment by experiment, build

// PSI data for it then write it to a file....

// Split the list of experiments into species- and size-specific files

// Skip empty experiments and give a warning about'em

// 1. Get the species of one of the interactors of the experiment.

//    The bioSource of the Experiment is irrelevant, as it may be an auxiliary experimental system.

"ERROR: Experiment without target-species: "

// 3. create the classification by publication

// add the experiment to the set of experiments.

"ERROR: Could not find a pubmed ID for experiment: "

// if multiple target-species have been found, that experiment will be associated redundantly

// to each BioSource. only the publication classification is non redundant.

// not yet in the structure, create an entry

//    The classification is as follow: datasets/pmid.xml contains the list of corresponding experiments.

"ERROR: PubMed id was null when classifying experiment '"

"PubMed id was null when classifying experiment '"

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uk.ac.ebi.intact.application.dataConversion.ExperimentListGenerator$SimplifiedAnnotatedObject
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