Public

<init>

getQualifier

getSecondaryId

ScheduledThreadPoolExecutor

Updating database using SQL prepared statement

java.lang.String

A controller for the selection of SelectableChannel objects. Selectable channels
can be registered w

java.nio.channels.Selector

The base class for all formats. This is an abstract base class which specifies
the protocol for clas

java.text.Format

This class implements a vector of bits that grows as needed. Each component of
the bit set has a boo

java.util.BitSet

A legacy iteration interface.New code should use Iterator instead. Iterator
replaces the enumeration

java.util.Enumeration

A filter is an object that performs filtering tasks on either the request to a
resource (a servlet o

javax.servlet.Filter

onCreateOptionsMenu

Returns a stream for the resource with the specified name. See
#getResource(String) for a descriptio

getResourceAsStream

runOnUiThread

/**
 * Persist the Interaction according to its PSI description. A Shortlabel is automatically generated based on
 * the gene names of the participant, if no gene name are available we use the protein AC. An Interaction
 * can be linked to multiple experiment in PSI, we do take it into account and we manages cases where an interaction
 * already exists, attached to one Experiment (let's call it E1) and the same interaction is also declared in the
 * PSI file as interacting in E1 and E2, in which case we just create an extra interaction and link it to E2. 
 * So far, we do not automatically link several Experiment to a single Interaction using the PSI loader. 
 *
 * @param interactionTag the PSI definition of the Interaction
 *
 * @return the collection of created IntAct Interaction.
 *
 * @throws IntactException if an error occurs while persisting the data in IntAct.
 */

// that updates the experiment collection and only leaves those for which we have to create a new interaction

// LOOP HERE OVER THE RESULT COLLECTION(shortlabel, experiment)

/* Components
            * The way to create an Interaction is NOT TRIVIAL: we have firstly to create an
            * Interaction Object with an empty collection of Component. and Then we have to
            * use the interaction.addComponent( Component c ) to fill it up.
            */

// check if there is a Kd value available

// search for an annotation to re-use, instead of creating a new one.

// doesn't exist, then create a new Annotation

// no need for an else, the additional annotation topic have been controlled by the checker.

// TODO clean that thing. Right now we are most of the time stuffing the author confidence as annotation

// TODO look after that unit parameter, we might have to adapt the CvTopic accordingly later.

// check if that annotation could not be shared.

How to use getQualifiermethodin uk.ac.ebi.intact.application.commons.go.GoXrefHelper

Best Java code snippets using uk.ac.ebi.intact.application.commons.go.GoXrefHelper.getQualifier (Showing top 3 results out of 315)

How to use
getQualifier
method
in
uk.ac.ebi.intact.application.commons.go.GoXrefHelper