public static DbReference createDbReferencePsiMi(String psiMiRef) { DbReference ref = createDbReferenceIdentity(psiMiRef, "MI:0488", "psi-mi"); ref.setId(psiMiRef); return ref; }
public DbReference( String id, String db ) { setId( id ); setDb( db ); }
public static DbReference createDbReference(String primaryId, String dbAc, String dbName, String refTypeAc, String refTypeName) { DbReference dbRef = new DbReference(); dbRef.setId(primaryId); dbRef.setDbAc(dbAc); dbRef.setDb(dbName); dbRef.setRefType(refTypeName); dbRef.setRefTypeAc(refTypeAc); return dbRef; }
names.setFullName("range"); rangeRef.setId(MI_RANGE_INTERVAL); names.setFullName("greater-than"); rangeRef.setId(MI_RANGE_GREATER); names.setFullName("less-than"); rangeRef.setId(MI_RANGE_LESS); rangeRef.setId(MI_RANGE_N_TERM); rangeRef.setId(MI_RANGE_C_TERM); names.setFullName("undetermined sequence position"); rangeRef.setId(MI_RANGE_UNDETERMINED); names.setFullName("certain sequence position"); rangeRef.setId(MI_RANGE_CERTAIN);
dbRef.setId(intactObject.getPrimaryId()); dbRef.setSecondary(intactObject.getSecondaryId()); dbRef.setVersion(intactObject.getDbRelease());
public psidev.psi.mi.xml.model.DbReference fromJaxb( psidev.psi.mi.xml253.jaxb.DbReferenceType jDbReference ) { if ( jDbReference == null ) { throw new IllegalArgumentException( "You must give a non null JAXB DbReference." ); } psidev.psi.mi.xml.model.DbReference mDbReference = new psidev.psi.mi.xml.model.DbReference(); // Initialise the model reading the Jaxb object // 1. set attributes mDbReference.setDb( jDbReference.getDb() ); mDbReference.setDbAc( jDbReference.getDbAc() ); mDbReference.setId( jDbReference.getId() ); mDbReference.setRefType( jDbReference.getRefType() ); mDbReference.setRefTypeAc( jDbReference.getRefTypeAc() ); mDbReference.setSecondary( jDbReference.getSecondary() ); mDbReference.setVersion( jDbReference.getVersion() ); return mDbReference; }
public psidev.psi.mi.xml.model.DbReference fromJaxb( psidev.psi.mi.xml254.jaxb.DbReference jDbReference ) { if ( jDbReference == null ) { throw new IllegalArgumentException( "You must give a non null JAXB DbReference." ); } psidev.psi.mi.xml.model.DbReference mDbReference = new psidev.psi.mi.xml.model.DbReference(); // Initialise the model reading the Jaxb object // 1. set attributes mDbReference.setDb( jDbReference.getDb() ); mDbReference.setDbAc( jDbReference.getDbAc() ); mDbReference.setId( jDbReference.getId() ); mDbReference.setRefType( jDbReference.getRefType() ); mDbReference.setRefTypeAc( jDbReference.getRefTypeAc() ); mDbReference.setSecondary( jDbReference.getSecondary() ); mDbReference.setVersion( jDbReference.getVersion() ); return mDbReference; }
dbRef.setDb(PSIMI); dbRef.setDbAc(PSIMI_MI); dbRef.setId(UNSPECIFIED_ROLE); dbRef.setRefType(IDENTITY); dbRef.setRefTypeAc(IDENTITY_REF); dbRef.setDb(PSIMI); dbRef.setDbAc(PSIMI_MI); dbRef.setId(UNSPECIFIED_ROLE); dbRef.setRefType(IDENTITY); dbRef.setRefTypeAc(IDENTITY_REF); dbRef.setDb(PSIMI); dbRef.setDbAc(PSIMI_MI); dbRef.setId(FEATURE_TYPE); dbRef.setRefType(IDENTITY); dbRef.setRefTypeAc(IDENTITY_REF); dbRef.setDb(PSIMI); dbRef.setDbAc(PSIMI_MI); dbRef.setId(participantIdentificationMethod.getIdentifier()); dbRef.setRefType(IDENTITY); dbRef.setRefTypeAc(IDENTITY_REF); dbRef.setId(participantIdentificationMethod.getIdentifier()); dbRef.setDb(participantIdentificationMethod.getDatabase());