How to use
getAnnotations
method
in
psidev.psi.mi.jami.model.Interactor

Best Java code snippets using psidev.psi.mi.jami.model.Interactor.getAnnotations (Showing top 4 results out of 315)

Common ways to obtain Interactor

private void myMethod () {
 Interactor i =Participant participant;participant.getInteractor()
Smart code suggestions by Codota
}

@Override
public void writeParticipantAnnotations(ParticipantEvidence participant) throws IOException {
  if (participant != null){
    Collection<Annotation> noExportAnnotations = AnnotationUtils.collectAllAnnotationsHavingTopic(participant.getInteractor().getAnnotations(),
        null, "no-export");
    Collection<Annotation> exportAnnotations = new ArrayList<Annotation>(participant.getInteractor().getAnnotations());
    exportAnnotations.removeAll(noExportAnnotations);
    Collection<Annotation> noExportAnnotations2 = AnnotationUtils.collectAllAnnotationsHavingTopic(participant.getAnnotations(),

public void writeParticipantAnnotations(P participant) throws IOException {
  if (participant != null){
    if (!participant.getInteractor().getAnnotations().isEmpty()){
      Iterator<Annotation> interactorAnnotationIterator = participant.getInteractor().getAnnotations().iterator();

/***
 * This method will copy properties of interactor source in interactor target and will override all the other properties of Target interactor.
 * @param source
 * @param target
 */
public static void copyAndOverrideBasicInteractorProperties(Interactor source, Interactor target){
  if (source != null && target != null){
    target.setShortName(source.getShortName());
    target.setFullName(source.getFullName());
    target.setInteractorType(source.getInteractorType());
    target.setOrganism(source.getOrganism());
    // copy collections
    target.getAnnotations().clear();
    target.getAnnotations().addAll(source.getAnnotations());
    target.getIdentifiers().clear();
    target.getIdentifiers().addAll(source.getIdentifiers());
    target.getAliases().clear();
    target.getAliases().addAll(source.getAliases());
    target.getXrefs().clear();
    target.getXrefs().addAll(source.getXrefs());
    target.getChecksums().clear();
    target.getChecksums().addAll(source.getChecksums());
  }
}

for (Annotation a : interactor.getAnnotations()){
  checkAnnotation(messages, a, interactor, "interactor");

Javadoc

Collection of annotations for an interactor. The set cannot be null and if the interactor does not have any annotations, the method should return an empty Collection. Ex: pharmacology, isoform-comment, etc.

Popular methods of Interactor

getShortName
The short name of the interactor. It cannot be null or empty. Ex: brca2
getAliases
Collection of aliases for an interactor The Collection cannot be null and if the interactor does not
getIdentifiers
Set of identifiers for this interactor. The identifiers can be from different databases, can be prim
getInteractorType
The molecule type of this interactor. It is a controlled vocabulary term and cannot be null. Ex: pro
getOrganism
The original source organism for this interactor. It can be null in case of chemical compounds/synth
getChecksums
Set of checksums computed for this interactor. The Collection cannot be null so when an interactor d
getXrefs
Collection of other xrefs that give more information about the interactor. Ex: GO references to give
getFullName
The full name of the interactor. It can be null Ex: Breast cancer type 2 susceptibility protein
getPreferredIdentifier
The identifier in the list of identifiers which is the preferred identifier. If no identifiers is pr
setFullName
Sets the full name of the interactor
setOrganism
Sets the source organism of this interactor
setInteractorType
Sets the molecule type for this interactor If the given type is null, this method automatically sets

Popular in Java

Reading from database using SQL prepared statement
getOriginalFilename (MultipartFile)
Return the original filename in the client's filesystem.This may contain path information depending
findViewById (Activity)
getExternalFilesDir (Context)
FlowLayout (java.awt)
A flow layout arranges components in a left-to-right flow, much like lines of text in a paragraph. F
FileReader (java.io)
A specialized Reader that reads from a file in the file system. All read requests made by calling me
Socket (java.net)
Provides a client-side TCP socket.
DecimalFormat (java.text)
DecimalFormat is a concrete subclass ofNumberFormat that formats decimal numbers. It has a variety o
CountDownLatch (java.util.concurrent)
A synchronization aid that allows one or more threads to wait until a set of operations being perfor
ThreadPoolExecutor (java.util.concurrent)
An ExecutorService that executes each submitted task using one of possibly several pooled threads, n

How to use getAnnotationsmethodin psidev.psi.mi.jami.model.Interactor

Best Java code snippets using psidev.psi.mi.jami.model.Interactor.getAnnotations (Showing top 4 results out of 315)

How to use
getAnnotations
method
in
psidev.psi.mi.jami.model.Interactor