How to use
commonLeaves
method
in
phylo.tree.model.TreeUtils

Best Java code snippets using phylo.tree.model.TreeUtils.commonLeaves (Showing top 2 results out of 315)

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private void myMethod () {
 ScheduledThreadPoolExecutor s =new ScheduledThreadPoolExecutor(corePoolSize)
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String str;new ScheduledThreadPoolExecutor(1, new ThreadFactoryBuilder().setNameFormat(str).build())
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}

/**
 * Returns the list of leaves contained in all trees
 *
 * @param trees the trees
 * @return sharedLeaves the leaves common to all trees
 */
public static List<String> commonLeaves(Collection<Tree> trees) {
  return commonLeaves(trees.toArray(new Tree[trees.size()]));
}

for (int i = 0; i < trees.size() - 1; i++) {
  for (int j = i + 1; j < trees.size(); j++) {
    List<String> commonTaxa = TreeUtils.commonLeaves(Arrays.asList(trees.get(i), trees.get(j)));
    if (commonTaxa.size() > 1) {
      double[] distances = new double[commonTaxa.size() - 1];

Javadoc

Returns the list of leaves contained in all trees

Popular methods of TreeUtils

getLeafLabels
The set of labels of all leafs below the input tree node
pruneDegreeOneNodes
deleteInnerLabels
Clones all trees and removes all innter vertex labels from the clones. The given source trees are no
getChildrenMap
pruneInnerNode
Deletes the specified node from the tree.The child of this node becomes child of its parent. If the
removeSubtreeFromTree
reorderingBootstrapLabelsForRooting
rerootToOutgroup
Reroot tree with the new root placed at the incomming edge of the given outgroup
addLeafesFromChildren
buildFitchUnion
calculateTreeResolution
checkForChilds

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How to use commonLeavesmethodin phylo.tree.model.TreeUtils

Best Java code snippets using phylo.tree.model.TreeUtils.commonLeaves (Showing top 2 results out of 315)

How to use
commonLeaves
method
in
phylo.tree.model.TreeUtils