How to use
getSamples
method
in
org.opencb.opencga.storage.core.variant.io.VariantVcfDataWriter

Best Java code snippets using org.opencb.opencga.storage.core.variant.io.VariantVcfDataWriter.getSamples (Showing top 1 results out of 315)

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private void myMethod () {
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}

LinkedHashSet<VCFHeaderLine> meta = new LinkedHashSet<>();
sampleNames.clear();
sampleNames.addAll(getSamples());
logger.info("Use {} samples for export ... ", this.sampleNames.size());
sampleNameMapping.putAll(

Popular methods of VariantVcfDataWriter

<init>
adjustedVariantStart
Adjust start/end if a reference base is required due to an empty allele. All variants are checked du
buildAlleles
addAnnotationInfo
addAnnotations
addCohortInfo
addStats
buildAllele
close
convertVariantToVariantContext
Convert org.opencb.biodata.models.variant.Variant into a htsjdk.variant.variantcontext.VariantContex
getOri
getOriginalAlleleIndex

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How to use getSamplesmethodin org.opencb.opencga.storage.core.variant.io.VariantVcfDataWriter

Best Java code snippets using org.opencb.opencga.storage.core.variant.io.VariantVcfDataWriter.getSamples (Showing top 1 results out of 315)

How to use
getSamples
method
in
org.opencb.opencga.storage.core.variant.io.VariantVcfDataWriter