How to use

getOffset

method

in

org.opencb.opencga.core.config.Catalog

List<String> aliasList = new ArrayList<>();
for (String studyStr : studyList) {
  if (StringUtils.isNumeric(studyStr) && Long.parseLong(studyStr) > configuration.getCatalog().getOffset()) {
    idList.add(Long.parseLong(studyStr));
  } else {

public void initializeMetaCollection(Configuration configuration) throws CatalogException {
  Admin admin = configuration.getAdmin();
  admin.setPassword(CatalogAuthenticationManager.cypherPassword(admin.getPassword()));
  Metadata metadata = new Metadata().setIdCounter(configuration.getCatalog().getOffset()).setVersion(VERSION);
  Document metadataObject = getMongoDBDocument(metadata, "Metadata");
  metadataObject.put(PRIVATE_ID, MongoDBAdaptorFactory.METADATA_OBJECT_ID);
  Document adminDocument = getMongoDBDocument(admin, "Admin");
  metadataObject.put("admin", adminDocument);
  metaCollection.insert(metadataObject, null);
}

long variableSetId;
if (StringUtils.isNumeric(variableStr) && Long.parseLong(variableStr) > configuration.getCatalog().getOffset()) {
  variableSetId = Long.parseLong(variableStr);
  Query query = new Query(StudyDBAdaptor.QueryParams.VARIABLE_SET_UID.key(), variableSetId);