public void setDatasetExperimenterGroupRef(String experimenterGroup, int datasetIndex) { // Parents: {u'OME': None} // ExperimenterGroupRef is reference and occurs more than once ExperimenterGroupRef experimenterGroup_reference = new ExperimenterGroupRef(); experimenterGroup_reference.setID(experimenterGroup); model.addReference( root.getDataset(datasetIndex), experimenterGroup_reference); }
public void setFolderROIRef(String roi, int folderIndex, int ROIRefIndex) { // Parents: {u'OME': None} // ROIRef is reference and occurs more than once ROIRef roiLinks_reference = new ROIRef(); roiLinks_reference.setID(roi); model.addReference( root.getFolder(folderIndex), roiLinks_reference); }
public void setScreenAnnotationRef(String annotation, int screenIndex, int annotationRefIndex) { // Parents: {u'OME': None} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getScreen(screenIndex), annotationLinks_reference); }
public void setDatasetExperimenterRef(String experimenter, int datasetIndex) { // Parents: {u'OME': None} // ExperimenterRef is reference and occurs more than once ExperimenterRef experimenter_reference = new ExperimenterRef(); experimenter_reference.setID(experimenter); model.addReference( root.getDataset(datasetIndex), experimenter_reference); }
public void setFolderROIRef(String roi, int folderIndex, int ROIRefIndex) { // Parents: {u'OME': None} // ROIRef is reference and occurs more than once ROIRef roiLinks_reference = new ROIRef(); roiLinks_reference.setID(roi); model.addReference( root.getFolder(folderIndex), roiLinks_reference); }
public void setImageROIRef(String roi, int imageIndex, int ROIRefIndex) { // Parents: {u'OME': None} // ROIRef is reference and occurs more than once ROIRef roiLinks_reference = new ROIRef(); roiLinks_reference.setID(roi); model.addReference( root.getImage(imageIndex), roiLinks_reference); }
public void setProjectExperimenterRef(String experimenter, int projectIndex) { // Parents: {u'OME': None} // ExperimenterRef is reference and occurs more than once ExperimenterRef experimenter_reference = new ExperimenterRef(); experimenter_reference.setID(experimenter); model.addReference( root.getProject(projectIndex), experimenter_reference); }
public void setScreenPlateRef(String plate, int screenIndex, int plateRefIndex) { // Parents: {u'OME': None} // PlateRef is reference and occurs more than once PlateRef plateLinks_reference = new PlateRef(); plateLinks_reference.setID(plate); model.addReference( root.getScreen(screenIndex), plateLinks_reference); }
public void setArcAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((Arc)root.getInstrument(instrumentIndex).getLightSource(lightSourceIndex)), annotationLinks_reference); }
public void setFilterAnnotationRef(String annotation, int instrumentIndex, int filterIndex, int annotationRefIndex) { // Parents: {u'Instrument': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getInstrument(instrumentIndex).getFilter(filterIndex), annotationLinks_reference); }
public void setGenericExcitationSourceAnnotationRef(String annotation, int instrumentIndex, int lightSourceIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((GenericExcitationSource)root.getInstrument(instrumentIndex).getLightSource(lightSourceIndex)), annotationLinks_reference); }
public void setListAnnotationAnnotationRef(String annotation, int listAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getListAnnotation(listAnnotationIndex), annotationLinks_reference); }
public void setMicrobeamManipulationExperimenterRef(String experimenter, int experimentIndex, int microbeamManipulationIndex) { // Parents: {u'Experiment': {u'OME': None}} // ExperimenterRef is reference and occurs more than once ExperimenterRef experimenter_reference = new ExperimenterRef(); experimenter_reference.setID(experimenter); model.addReference( root.getExperiment(experimentIndex).getMicrobeamManipulation(microbeamManipulationIndex), experimenter_reference); }
public void setMicrobeamManipulationROIRef(String roi, int experimentIndex, int microbeamManipulationIndex, int ROIRefIndex) { // Parents: {u'Experiment': {u'OME': None}} // ROIRef is reference and occurs more than once ROIRef roiLinks_reference = new ROIRef(); roiLinks_reference.setID(roi); model.addReference( root.getExperiment(experimentIndex).getMicrobeamManipulation(microbeamManipulationIndex), roiLinks_reference); }
public void setPlateAcquisitionWellSampleRef(String wellSample, int plateIndex, int plateAcquisitionIndex, int wellSampleRefIndex) { // Parents: {u'Plate': {u'OME': None}} // WellSampleRef is reference and occurs more than once WellSampleRef wellSamples_reference = new WellSampleRef(); wellSamples_reference.setID(wellSample); model.addReference( root.getPlate(plateIndex).getPlateAcquisition(plateAcquisitionIndex), wellSamples_reference); }
public void setWellAnnotationRef(String annotation, int plateIndex, int wellIndex, int annotationRefIndex) { // Parents: {u'Plate': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getPlate(plateIndex).getWell(wellIndex), annotationLinks_reference); }
public void setXMLAnnotationAnnotationRef(String annotation, int XMLAnnotationIndex, int annotationRefIndex) { // Parents: {u'StructuredAnnotations': {u'OME': None}} // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( root.getStructuredAnnotations().getXMLAnnotation(XMLAnnotationIndex), annotationLinks_reference); }
public void setPolygonAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((Polygon)root.getROI(ROIIndex).getUnion().getShape(shapeIndex)), annotationLinks_reference); }
public void setMaskAnnotationRef(String annotation, int ROIIndex, int shapeIndex, int annotationRefIndex) { // Parents: None // AnnotationRef is reference and occurs more than once AnnotationRef annotationLinks_reference = new AnnotationRef(); annotationLinks_reference.setID(annotation); model.addReference( ((Mask)root.getROI(ROIIndex).getUnion().getShape(shapeIndex)), annotationLinks_reference); }
public void setLightPathDichroicRef(String dichroic, int imageIndex, int channelIndex) { // Parents: {u'Channel': {u'Pixels': {u'Image': {u'OME': None}}}} // DichroicRef is reference and occurs more than once DichroicRef dichroic_reference = new DichroicRef(); dichroic_reference.setID(dichroic); model.addReference( root.getImage(imageIndex).getPixels().getChannel(channelIndex).getLightPath(), dichroic_reference); }