/** * Return an array of ConceptClasses that correspond to the ids in the metadata. * * @param graph - ondex graph * @param strIds - array of ids * @return */ public static ConceptClass[] convertConceptClasses(final ONDEXGraph graph, final String[] strIds) { ConceptClass[] result = new ConceptClass[strIds.length]; for (int i = 0; i < strIds.length; i++) { result[i] = createCC(graph, strIds[i]); } return result; }
RelationType en_by = MdHelper.createRT(graph, "en_by"); RelationType is_a = MdHelper.createRT(graph, "is_a"); ConceptClass reaction = MdHelper.createCC(graph, "Reaction"); for(ONDEXConcept c : graph.getConceptsOfConceptClass(reaction)){
RelationType is_a = MdHelper.createRT(graph, "is_a"); RelationType en_by = MdHelper.createRT(graph, "en_by"); ConceptClass reaction = MdHelper.createCC(graph, "Reaction"); for(ONDEXConcept c : graph.getConceptsOfConceptClass(reaction)){ for(ONDEXConcept c1 : StandardFunctions.getOtherNodes(graph, c, prod_by, cons_by)){
if(chkNodesCreate.isSelected()){ if(!txtNodesType.getText().trim().equals("")){ cc = MdHelper.createCC(graph, txtNodesType.getText()); cc = MdHelper.createCC(graph, "Thing"); for(String s : ent.getValue()){ String name = String.valueOf(header[ent.getKey()])+"_"+s; ONDEXConcept tag1 = graph.getFactory().createConcept(name, uc, MdHelper.createCC(graph, "Subset"), ev); tag1.createConceptName(name, true); tags.put(new ArrayKey<Object>(new Object[]{ent.getKey(), s}), tag1); tag = graph.getFactory().createConcept(jTextField2.getText().trim(), uc, MdHelper.createCC(graph, "Subset"), ev); tag.createConceptName(jTextField2.getText().trim(), true);
cc = MdHelper.createCC(graph, txtEdgesNodeType.getText().trim()); cc = MdHelper.createCC(graph, "Thing"); cc1 = MdHelper.createCC(graph, txtEdgesNodeType1.getText().trim()); cc1 = MdHelper.createCC(graph, "Thing"); tag = graph.getFactory().createConcept(jTextField1.getText().trim(), uc, MdHelper.createCC(graph, "Subset"), ev); tag.createConceptName(jTextField1.getText().trim(), true);
ConceptClass cc = createCC(graph, entityCls); ONDEXConcept seed = null; ConceptClass cls = MdHelper.createCC(graph, ontoCls); for (ONDEXConcept c : graph.getConceptsOfConceptClass(cls)) { for (ConceptName n : c.getConceptNames()) {
/** * Creates new form NewJFrame1 */ public SetSelector() throws Exception { if (OVTK2Desktop.getDesktopResources().getSelectedViewer() == null) { return; } OVTK2Desktop.getInstance().getDesktopResources().getParentPane().add(this); graph = OVTK2Desktop.getDesktopResources().getSelectedViewer().getONDEXJUNGGraph(); initComponents(); this.setVisible(true); this.setTitle("Show tagget sets for members"); DefaultListModel listModel = new DefaultListModel(); lSets.setModel(listModel); for (ONDEXConcept c : graph.getConceptsOfConceptClass(MdHelper.createCC(graph, "Superset"))) { JCheckBox check = new JCheckBox(c.getConceptName().getName()); supersets.put(check, c); listModel.addElement(check); } System.err.println("Set selectior initialized."); }
ConceptClass cls = MdHelper.createCC(graph, ontoCls); for (ONDEXConcept c : graph.getConceptsOfConceptClass(cls)) { for (ConceptName n : c.getConceptNames()) {
Color color = new Color(r, g, b); ONDEXConcept seed = null; ConceptClass cls = MdHelper.createCC(graph, ontoCls); for (ONDEXConcept c : graph.getConceptsOfConceptClass(cls)) { for (ConceptName n : c.getConceptNames()) {