if (xd != null && xd.unit().isConvertible(UNITS.MICROMETER)) xcal = xd.value(UNITS.MICROMETER).doubleValue(); Length yd = meta.getPixelsPhysicalSizeY(series); if (yd != null && yd.unit().isConvertible(UNITS.MICROMETER)) ycal = yd.value(UNITS.MICROMETER).doubleValue();
@Test(groups = {"all", "fast", "automated"}) public void testPhysicalSizeY() { if (config == null) throw new SkipException("No config tree"); String testName = "PhysicalSizeY"; if (!initFile()) result(testName, false, "initFile"); IMetadata retrieve = (IMetadata) reader.getMetadataStore(); for (int i=0; i<reader.getSeriesCount(); i++) { config.setSeries(i); Length expectedSize = config.getPhysicalSizeY(); Length realSize = retrieve.getPixelsPhysicalSizeY(i); if (!isAlmostEqual(realSize,expectedSize)) { result(testName, false, "Series " + i + " (expected " + expectedSize + ", actual " + realSize + ")"); } } result(testName, true); }
if (xd != null && xd.unit().isConvertible(UNITS.MICROMETER)) xcal = xd.value(UNITS.MICROMETER).doubleValue(); Length yd = meta.getPixelsPhysicalSizeY(series); if (yd != null && yd.unit().isConvertible(UNITS.MICROMETER)) ycal = yd.value(UNITS.MICROMETER).doubleValue();
dest.setPixelsPhysicalSizeX(physicalSizeX, image); Length physicalSizeY = src.getPixelsPhysicalSizeY(image); if (physicalSizeY != null && physicalSizeY.value() != null) { physicalSizeY = FormatTools.getPhysicalSize(physicalSizeY.value().doubleValue(), physicalSizeY.unit().getSymbol());
dest.setPixelsPhysicalSizeX(physicalSizeX, image); Length physicalSizeY = src.getPixelsPhysicalSizeY(image); if (physicalSizeY != null && physicalSizeY.value() != null) { physicalSizeY = FormatTools.getPhysicalSize(physicalSizeY.value().doubleValue(), physicalSizeY.unit().getSymbol());
seriesTable.put(PHYSICAL_SIZE_X_UNIT, physicalX.unit().getSymbol()); Length physicalY = retrieve.getPixelsPhysicalSizeY(index); if (physicalY != null) { seriesTable.put(PHYSICAL_SIZE_Y, physicalY.value().toString());