mSeq = new String[readInt(is)]; // # sequences mChr2tid = new HashMap<String, Integer>( this.mSeq.length ); mPreset = readInt(is); mSc = readInt(is); mBc = readInt(is); mEc = readInt(is); mMeta = readInt(is); readInt(is);//unused int i, j, k, l = readInt(is); buf = new byte[l]; is.read(buf); for (i = 0; i < mSeq.length; ++i) { int n_bin = readInt(is); mIndex[i] = new TIndex(); mIndex[i].b = new HashMap<Integer, TPair64[]>(n_bin); for (j = 0; j < n_bin; ++j) { int bin = readInt(is); TPair64[] chunks = new TPair64[readInt(is)]; for (k = 0; k < chunks.length; ++k) { long u = readLong(is); mIndex[i].l = new long[readInt(is)]; for (k = 0; k < mIndex[i].l.length; ++k) mIndex[i].l[k] = readLong(is);
mSeq = new String[readInt(is)]; // # sequences mChr2tid = new HashMap<String, Integer>( this.mSeq.length ); mPreset = readInt(is); mSc = readInt(is); mBc = readInt(is); mEc = readInt(is); mMeta = readInt(is); readInt(is);//unused int i, j, k, l = readInt(is); buf = new byte[l]; is.read(buf); for (i = 0; i < mSeq.length; ++i) { int n_bin = readInt(is); mIndex[i] = new TIndex(); mIndex[i].b = new HashMap<Integer, TPair64[]>(n_bin); for (j = 0; j < n_bin; ++j) { int bin = readInt(is); TPair64[] chunks = new TPair64[readInt(is)]; for (k = 0; k < chunks.length; ++k) { long u = readLong(is); mIndex[i].l = new long[readInt(is)]; for (k = 0; k < mIndex[i].l.length; ++k) mIndex[i].l[k] = readLong(is);
mSeq = new String[readInt(is)]; // # sequences mChr2tid = new HashMap<String, Integer>(); mPreset = readInt(is); mSc = readInt(is); mBc = readInt(is); mEc = readInt(is); mMeta = readInt(is); readInt(is);//unused int i, j, k, l = readInt(is); buf = new byte[l]; is.read(buf); for (i = 0; i < mSeq.length; ++i) { int n_bin = readInt(is); mIndex[i] = new TIndex(); mIndex[i].b = new HashMap<Integer, TPair64[]>(n_bin); for (j = 0; j < n_bin; ++j) { int bin = readInt(is); TPair64[] chunks = new TPair64[readInt(is)]; for (k = 0; k < chunks.length; ++k) { long u = readLong(is); mIndex[i].l = new long[readInt(is)]; for (k = 0; k < mIndex[i].l.length; ++k) mIndex[i].l[k] = readLong(is);
int i, j, len = TabixReader.readInt(is); buf = new byte[len]; is.read(buf);
int i, j, len = TabixReader.readInt(is); buf = new byte[len]; is.read(buf);
int i, j, len = TabixReader.readInt(is); buf = new byte[len]; is.read(buf);