/** * Write a CRAM file header and SAM header to the stream. * @param header SAMFileHeader to write */ public void writeHeader(final SAMFileHeader header) { // TODO: header must be written exactly once per writer life cycle. offset = CramIO.writeHeader(cramVersion, outputStream, header, cramID); }
/** * Write a CRAM file header and SAM header to the stream. * @param header SAMFileHeader to write */ public void writeHeader(final SAMFileHeader header) { // TODO: header must be written exactly once per writer life cycle. offset = CramIO.writeHeader(cramVersion, outputStream, header, cramID); }
private OutputStream prepareCRAMStream( OutputStream out, final SAMFormat format, final SAMFileHeader header) throws IOException { CramIO.writeHeader(CramVersions.DEFAULT_CRAM_VERSION, out, header, null); return out; }
private OutputStream prepareCRAMStream( OutputStream out, final SAMFormat format, final SAMFileHeader header) throws IOException { CramIO.writeHeader(CramVersions.DEFAULT_CRAM_VERSION, out, header, null); return out; }
private OutputStream prepareCRAMStream( OutputStream out, final SAMFormat format, final SAMFileHeader header) throws IOException { CramIO.writeHeader(CramVersions.DEFAULT_CRAM_VERSION, out, header, null); return out; }
/** * Write a CRAM file header and SAM header to the stream. * * @param header * SAMFileHeader to write */ public void writeHeader(final SAMFileHeader header) { // TODO: header must be written exactly once per writer life cycle. offset = CramIO.writeHeader(cramVersion, outputStream, header, cramID); }