- getSequenceDictionary
- setSortOrder
- <init>
Constructor that initializes the sequence dictionary with the provided one.
- getReadGroups
- getSortOrder
- getProgramRecords
- getSequence
Look up sequence record by name.
- setSequenceDictionary
Replace entire sequence dictionary. The given sequence dictionary is stored, not
copied.
- addReadGroup
- getSequenceIndex
- setReadGroups
Replace entire list of read groups. The given list is stored, not copied.
- clone