- <init>
Create a new chunk list from the given list of chunks.
- getGATKChunks
Gets the constituent chunks stored in this span.
- minus
Substracts other file span from this file span.
- union
Computes the union of two FileSpans.
- getChunks
- getExtent
Get a GATKChunk representing the "extent" of this file span, from the start of
the first chunk to th
- intersection
Intersects two BAM file spans.
- isEmpty
- size
Returns an approximation of the number of uncompressed bytes in this file span.
- validateSorted
Validates the list of chunks to ensure that they appear in sorted order.